Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Borcs7-201ENSMUST00000074912 2176 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Gm6157-201ENSMUST00000199935 1897 ntBASIC9.64□□□□□ -0.87
Hmgb3O54879 Cd276-201ENSMUST00000039788 3186 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 BC043934-202ENSMUST00000185694 2356 ntBASIC9.64□□□□□ -0.87
Hmgb3O54879 Chdh-202ENSMUST00000118917 3406 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Gm8018-201ENSMUST00000173536 789 ntBASIC9.64□□□□□ -0.87
Hmgb3O54879 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
Hmgb3O54879 AC153929.1-201ENSMUST00000219009 303 ntBASIC9.64□□□□□ -0.87
Hmgb3O54879 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC9.64□□□□□ -0.87
Hmgb3O54879 AC125209.1-201ENSMUST00000225812 766 ntBASIC9.64□□□□□ -0.87
Hmgb3O54879 AC126253.1-202ENSMUST00000226732 835 ntBASIC9.64□□□□□ -0.87
Hmgb3O54879 AC150560.1-201ENSMUST00000227731 1187 ntBASIC9.64□□□□□ -0.87
Hmgb3O54879 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 2900041M22Rik-201ENSMUST00000155384 1784 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Cacna1d-207ENSMUST00000224198 6564 ntAPPRIS ALT2 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Gm43915-201ENSMUST00000203013 5037 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Pigb-206ENSMUST00000184035 3221 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Trpv1-203ENSMUST00000108470 2667 ntTSL 5 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Atxn1l-201ENSMUST00000093162 7526 ntAPPRIS P1 TSL 2 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Hsd3b1-201ENSMUST00000029465 1663 ntAPPRIS P1 TSL 2 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Smarcc2-201ENSMUST00000026433 4533 ntAPPRIS P3 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Gm21136-201ENSMUST00000186812 2575 ntBASIC9.64□□□□□ -0.87
Hmgb3O54879 Gm6605-201ENSMUST00000031488 2574 ntBASIC9.64□□□□□ -0.87
Hmgb3O54879 Trim46-203ENSMUST00000107464 3252 ntTSL 5 BASIC9.64□□□□□ -0.87
Hmgb3O54879 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hmgb3O54879 Tpp2-207ENSMUST00000188313 4631 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Rasal1-201ENSMUST00000031606 3212 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Nfx1-203ENSMUST00000098143 4594 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Ncoa3-201ENSMUST00000088095 7531 ntAPPRIS P2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC9.63□□□□□ -0.87
Hmgb3O54879 Brca2-201ENSMUST00000044620 10724 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
Hmgb3O54879 Phf3-201ENSMUST00000088310 7561 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Ldhb-201ENSMUST00000032373 1304 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC9.63□□□□□ -0.87
Hmgb3O54879 Btrc-209ENSMUST00000224478 2194 ntBASIC9.63□□□□□ -0.87
Hmgb3O54879 Prdm16-206ENSMUST00000105638 8601 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
Hmgb3O54879 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Ddx6-203ENSMUST00000217034 6029 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Slc17a5-201ENSMUST00000052441 3236 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Plpbp-203ENSMUST00000209525 5767 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Car12-202ENSMUST00000085420 3639 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Gm12502-201ENSMUST00000120197 444 ntBASIC9.63□□□□□ -0.87
Hmgb3O54879 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Gm20442-201ENSMUST00000174630 492 ntTSL 3 BASIC9.63□□□□□ -0.87
Hmgb3O54879 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Gm27701-201ENSMUST00000184498 110 ntBASIC9.63□□□□□ -0.87
Hmgb3O54879 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC9.63□□□□□ -0.87
Hmgb3O54879 Gm5904-201ENSMUST00000210286 865 ntBASIC9.63□□□□□ -0.87
Hmgb3O54879 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 AC162801.1-201ENSMUST00000220612 198 ntBASIC9.63□□□□□ -0.87
Hmgb3O54879 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC9.63□□□□□ -0.87
Hmgb3O54879 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
Hmgb3O54879 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC9.63□□□□□ -0.87
Hmgb3O54879 Gm2423-201ENSMUST00000074863 733 ntBASIC9.63□□□□□ -0.87
Hmgb3O54879 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC9.63□□□□□ -0.87
Hmgb3O54879 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC9.63□□□□□ -0.87
Hmgb3O54879 Elovl7-201ENSMUST00000022207 4013 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Ppp1r7-201ENSMUST00000027494 10315 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Plxna3-201ENSMUST00000004326 6943 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Gtf2i-219ENSMUST00000174155 4141 ntAPPRIS P4 TSL 2 BASIC9.63□□□□□ -0.87
Hmgb3O54879 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC9.63□□□□□ -0.87
Hmgb3O54879 Ing5-201ENSMUST00000027505 4533 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Stk38-201ENSMUST00000009138 3288 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Dhx34-202ENSMUST00000118795 4076 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
Hmgb3O54879 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC9.63□□□□□ -0.87
Hmgb3O54879 Gm7789-202ENSMUST00000211273 1400 ntBASIC9.63□□□□□ -0.87
Hmgb3O54879 Bcl9-207ENSMUST00000166341 4652 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Spdye4a-201ENSMUST00000085733 1819 ntAPPRIS P2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hmgb3O54879 Gm36940-201ENSMUST00000194281 2036 ntBASIC9.63□□□□□ -0.87
Hmgb3O54879 Tmem19-201ENSMUST00000092170 3012 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 234.5 ms