Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Acat1-201ENSMUST00000034547 3405 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Trim56Q80VI1 Gm38089-201ENSMUST00000193585 1514 ntBASIC13.8□□□□□ -0.2
Trim56Q80VI1 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim56Q80VI1 AC126257.2-201ENSMUST00000215507 2300 ntBASIC13.79□□□□□ -0.2
Trim56Q80VI1 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Gm44573-201ENSMUST00000191753 2370 ntBASIC13.79□□□□□ -0.2
Trim56Q80VI1 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Gm7150-201ENSMUST00000122032 981 ntBASIC13.79□□□□□ -0.2
Trim56Q80VI1 Gm44270-201ENSMUST00000203084 1234 ntBASIC13.79□□□□□ -0.2
Trim56Q80VI1 Gm44506-201ENSMUST00000206278 965 ntBASIC13.79□□□□□ -0.2
Trim56Q80VI1 AC122408.1-201ENSMUST00000218949 218 ntBASIC13.79□□□□□ -0.2
Trim56Q80VI1 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Gm18065-201ENSMUST00000221395 526 ntBASIC13.79□□□□□ -0.2
Trim56Q80VI1 AC154849.4-201ENSMUST00000224868 365 ntBASIC13.79□□□□□ -0.2
Trim56Q80VI1 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Slc9a3-204ENSMUST00000225423 2589 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Trim56Q80VI1 AC165351.1-201ENSMUST00000219078 2020 ntBASIC13.79□□□□□ -0.2
Trim56Q80VI1 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Vcp-201ENSMUST00000030164 3316 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Trim56Q80VI1 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC13.78□□□□□ -0.2
Trim56Q80VI1 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
Trim56Q80VI1 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Trim56Q80VI1 AC166836.1-201ENSMUST00000219933 1795 ntBASIC13.78□□□□□ -0.2
Trim56Q80VI1 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Trim56Q80VI1 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Trim56Q80VI1 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Trim56Q80VI1 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Trim56Q80VI1 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.2
Trim56Q80VI1 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Trim56Q80VI1 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trim56Q80VI1 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Trim56Q80VI1 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trim56Q80VI1 Gm12419-201ENSMUST00000116649 636 ntBASIC13.77□□□□□ -0.21
Trim56Q80VI1 Gm11949-201ENSMUST00000117640 372 ntBASIC13.77□□□□□ -0.21
Trim56Q80VI1 Gm15725-201ENSMUST00000119947 1090 ntBASIC13.77□□□□□ -0.21
Trim56Q80VI1 Gm12176-201ENSMUST00000121420 875 ntBASIC13.77□□□□□ -0.21
Trim56Q80VI1 Gm14150-201ENSMUST00000122404 1354 ntBASIC13.77□□□□□ -0.21
Trim56Q80VI1 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Trim56Q80VI1 Gm5523-201ENSMUST00000180415 997 ntBASIC13.77□□□□□ -0.21
Trim56Q80VI1 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Trim56Q80VI1 Gm10731-201ENSMUST00000181171 448 ntBASIC13.77□□□□□ -0.21
Trim56Q80VI1 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Trim56Q80VI1 Gm4654-201ENSMUST00000183305 982 ntBASIC13.77□□□□□ -0.21
Trim56Q80VI1 Gm7504-201ENSMUST00000201449 424 ntBASIC13.77□□□□□ -0.21
Trim56Q80VI1 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC13.77□□□□□ -0.21
Trim56Q80VI1 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms