Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC11.4□□□□□ -0.58
Col28a1Q2UY11 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
Col28a1Q2UY11 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC11.4□□□□□ -0.59
Col28a1Q2UY11 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.59
Col28a1Q2UY11 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
Col28a1Q2UY11 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Col28a1Q2UY11 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
Col28a1Q2UY11 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.59
Col28a1Q2UY11 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Foxk1-201ENSMUST00000072837 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Spag16-202ENSMUST00000113940 3559 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gm12012-201ENSMUST00000118857 1066 ntBASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gm14017-201ENSMUST00000121934 386 ntBASIC11.39□□□□□ -0.59
Col28a1Q2UY11 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gm8176-201ENSMUST00000191297 1099 ntBASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gm44711-201ENSMUST00000205414 1264 ntBASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gm45186-201ENSMUST00000206874 478 ntBASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gm9445-201ENSMUST00000207454 1285 ntBASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gm14698-201ENSMUST00000096420 4226 ntAPPRIS P1 BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Gm38140-201ENSMUST00000193617 2755 ntBASIC11.39□□□□□ -0.59
Col28a1Q2UY11 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Gm13142-201ENSMUST00000117213 1453 ntBASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Gm9333-201ENSMUST00000205452 1323 ntBASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 1700019D03Rik-201ENSMUST00000050567 3641 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Prx-202ENSMUST00000098644 4841 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 AC125374.1-201ENSMUST00000213573 1400 ntBASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Gm15991-202ENSMUST00000212123 3565 ntBASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Gm9466-201ENSMUST00000218144 2246 ntBASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Col28a1Q2UY11 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC11.38□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms