Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 AC156568.1-201ENSMUST00000223018 712 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col2a1P28481 AC158392.3-201ENSMUST00000224271 1284 ntBASIC13.13□□□□□ -0.31
Col2a1P28481 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col2a1P28481 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Col2a1P28481 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Col2a1P28481 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col2a1P28481 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col2a1P28481 Lgr5-208ENSMUST00000173740 2508 ntTSL 5 BASIC13.13□□□□□ -0.31
Col2a1P28481 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
Col2a1P28481 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
Col2a1P28481 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col2a1P28481 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col2a1P28481 Ass1-201ENSMUST00000102840 1696 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col2a1P28481 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col2a1P28481 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Col2a1P28481 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col2a1P28481 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
Col2a1P28481 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Col2a1P28481 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Col2a1P28481 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Col2a1P28481 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Col2a1P28481 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC13.12□□□□□ -0.31
Col2a1P28481 Gm12816-201ENSMUST00000118069 1212 ntBASIC13.12□□□□□ -0.31
Col2a1P28481 Mir1905-201ENSMUST00000122779 82 ntBASIC13.12□□□□□ -0.31
Col2a1P28481 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC13.12□□□□□ -0.31
Col2a1P28481 Malat1-205ENSMUST00000174808 656 ntTSL 2 BASIC13.12□□□□□ -0.31
Col2a1P28481 Gm4753-201ENSMUST00000188327 1255 ntBASIC13.12□□□□□ -0.31
Col2a1P28481 1700088E04Rik-211ENSMUST00000190730 691 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Ube2d3-216ENSMUST00000199613 738 ntAPPRIS P2 TSL 3 BASIC13.12□□□□□ -0.31
Col2a1P28481 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
Col2a1P28481 AC168279.1-201ENSMUST00000214611 382 ntBASIC13.12□□□□□ -0.31
Col2a1P28481 AC154184.3-201ENSMUST00000225620 1090 ntBASIC13.12□□□□□ -0.31
Col2a1P28481 Rpl3l-201ENSMUST00000045186 1033 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Gm44153-201ENSMUST00000204162 1580 ntBASIC13.12□□□□□ -0.31
Col2a1P28481 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC13.12□□□□□ -0.31
Col2a1P28481 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Rabl2-202ENSMUST00000094056 1322 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 1700036A12Rik-202ENSMUST00000190053 1828 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Col2a1P28481 Ces3a-201ENSMUST00000093222 2046 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Col2a1P28481 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col2a1P28481 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
Col2a1P28481 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Col2a1P28481 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Gm25562-201ENSMUST00000104608 133 ntBASIC13.11□□□□□ -0.31
Col2a1P28481 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Il1rn-202ENSMUST00000114485 728 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Scgb2b25-ps-201ENSMUST00000121936 307 ntBASIC13.11□□□□□ -0.31
Col2a1P28481 1700123M08Rik-202ENSMUST00000146154 770 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Gm16030-201ENSMUST00000159098 603 ntBASIC13.11□□□□□ -0.31
Col2a1P28481 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC13.11□□□□□ -0.31
Col2a1P28481 Gm22877-201ENSMUST00000175451 105 ntBASIC13.11□□□□□ -0.31
Col2a1P28481 Gm26555-201ENSMUST00000180452 1037 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Gm42655-201ENSMUST00000202782 1134 ntBASIC13.11□□□□□ -0.31
Col2a1P28481 Gm18463-201ENSMUST00000207258 474 ntBASIC13.11□□□□□ -0.31
Col2a1P28481 Gm18460-201ENSMUST00000208088 464 ntBASIC13.11□□□□□ -0.31
Col2a1P28481 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC13.11□□□□□ -0.31
Col2a1P28481 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Col2a1P28481 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Col2a1P28481 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Fscn3-201ENSMUST00000031719 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Gm43152-201ENSMUST00000202495 1638 ntBASIC13.11□□□□□ -0.31
Col2a1P28481 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC13.11□□□□□ -0.31
Col2a1P28481 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col2a1P28481 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC13.11□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms