Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm37160-201ENSMUST00000193081 1689 ntBASIC9.38□□□□□ -0.91
Hoxd3P09027 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Psmd10-201ENSMUST00000033805 1430 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC9.38□□□□□ -0.91
Hoxd3P09027 Gm44260-201ENSMUST00000204946 2094 ntBASIC9.38□□□□□ -0.91
Hoxd3P09027 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
Hoxd3P09027 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hoxd3P09027 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC9.38□□□□□ -0.91
Hoxd3P09027 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Ms4a7-203ENSMUST00000067532 1334 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm7049-201ENSMUST00000223520 1712 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm5422-201ENSMUST00000050717 2721 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Ltbp2-201ENSMUST00000002073 6769 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm7722-201ENSMUST00000120646 741 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm5392-201ENSMUST00000122189 789 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm23884-201ENSMUST00000122687 294 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm17727-201ENSMUST00000171898 643 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Mir5120-201ENSMUST00000175020 78 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm24111-201ENSMUST00000175491 97 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm27552-201ENSMUST00000183351 62 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm27844-201ENSMUST00000183613 62 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm28065-201ENSMUST00000185290 833 ntTSL 3 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm4034-201ENSMUST00000187674 480 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm20379-201ENSMUST00000188317 1204 ntAPPRIS P1 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm18038-201ENSMUST00000197900 485 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 AC153954.1-201ENSMUST00000216959 255 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 AC164624.1-201ENSMUST00000219148 1025 ntTSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm46436-201ENSMUST00000221851 1294 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Abhd11os-203ENSMUST00000222613 363 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 AC134254.4-201ENSMUST00000223086 370 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Nsd1-205ENSMUST00000224693 852 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 AC147628.1-201ENSMUST00000228193 688 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm5455-201ENSMUST00000058710 715 ntBASIC9.37□□□□□ -0.91
Hoxd3P09027 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Adamts9-201ENSMUST00000113438 8016 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 2410002F23Rik-205ENSMUST00000107949 3610 ntAPPRIS P2 TSL 2 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Dab2ip-207ENSMUST00000112992 6184 ntTSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC9.37□□□□□ -0.91
Hoxd3P09027 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hoxd3P09027 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Col24a1-201ENSMUST00000029848 7143 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC9.36□□□□□ -0.91
Hoxd3P09027 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hoxd3P09027 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 47.4 ms