Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm6189-201ENSMUST00000164487 2082 ntBASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Syk-201ENSMUST00000055087 5122 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC11.08□□□□□ -0.64
Trim3Q9R1R2 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Ptprt-204ENSMUST00000109445 12082 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Gm45496-201ENSMUST00000209918 2917 ntBASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Gm11989-201ENSMUST00000117240 672 ntBASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Gm11439-201ENSMUST00000118598 409 ntBASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Gm11362-201ENSMUST00000118838 850 ntBASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Gm45433-201ENSMUST00000209386 247 ntBASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC11.07□□□□□ -0.64
Trim3Q9R1R2 Ippk-201ENSMUST00000021817 2856 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 4833420G17Rik-204ENSMUST00000225186 2627 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Gm18782-201ENSMUST00000209023 1399 ntBASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Gm14208-201ENSMUST00000119645 678 ntBASIC11.06□□□□□ -0.64
Trim3Q9R1R2 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Gm37466-201ENSMUST00000195692 652 ntBASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Gm17812-201ENSMUST00000204935 318 ntBASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 AC159205.5-202ENSMUST00000224849 386 ntBASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Slc6a5-201ENSMUST00000056442 7065 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Lrrc74b-203ENSMUST00000100123 2231 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 AC154671.1-201ENSMUST00000228617 1578 ntBASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Btnl1-201ENSMUST00000080254 1861 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Trim3Q9R1R2 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC11.06□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms