Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm15172-201ENSMUST00000118945 1046 ntBASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gm6506-201ENSMUST00000119775 1136 ntBASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gm13461-201ENSMUST00000120980 662 ntBASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gm8199-201ENSMUST00000121323 823 ntBASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gm23699-201ENSMUST00000158835 135 ntBASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gm20426-201ENSMUST00000173657 440 ntBASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gm4310-201ENSMUST00000177847 889 ntBASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gm7207-201ENSMUST00000211575 1067 ntBASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Ntng1-201ENSMUST00000051253 327 ntBASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gm5537-201ENSMUST00000091117 1252 ntBASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Ptpn14-202ENSMUST00000097442 10746 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Gm7537-201ENSMUST00000221660 1414 ntBASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Gm38117-201ENSMUST00000194653 939 ntBASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Gm9555-201ENSMUST00000200908 583 ntBASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 AC113082.1-201ENSMUST00000217324 327 ntBASIC12.03□□□□□ -0.48
Vps28Q9D1C8 CT009713.8-201ENSMUST00000225448 560 ntBASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Gm4316-201ENSMUST00000212411 2617 ntTSL 5 BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Vps28Q9D1C8 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Tns2-201ENSMUST00000046144 4718 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Gm45776-201ENSMUST00000212366 1522 ntBASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Gm42913-201ENSMUST00000197936 1853 ntBASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Tcf4-252ENSMUST00000202477 1873 ntTSL 5 BASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Vps28Q9D1C8 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Vps28Q9D1C8 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Vps28Q9D1C8 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 93.6 ms