Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 AC159308.2-201ENSMUST00000213592 2325 ntBASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Upf3bQ3ULL6 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm4909-201ENSMUST00000118749 794 ntBASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm28937-201ENSMUST00000185413 695 ntBASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm29400-201ENSMUST00000187208 695 ntBASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm28662-201ENSMUST00000188446 695 ntBASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm28251-201ENSMUST00000188835 695 ntBASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm37318-201ENSMUST00000194325 695 ntBASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm38017-201ENSMUST00000194768 695 ntBASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm37287-201ENSMUST00000195449 695 ntBASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm37793-201ENSMUST00000195548 695 ntBASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm5537-201ENSMUST00000091117 1252 ntBASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gm45053-201ENSMUST00000206112 2499 ntBASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Upf3bQ3ULL6 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Tnnt3-209ENSMUST00000105947 780 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Gm11450-201ENSMUST00000121144 333 ntBASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Gm11960-201ENSMUST00000122068 925 ntBASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Gm23085-201ENSMUST00000157849 293 ntBASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Gm18734-201ENSMUST00000172937 808 ntBASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Gm4482-201ENSMUST00000200876 742 ntBASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Gm45575-201ENSMUST00000210283 548 ntBASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Gm18986-201ENSMUST00000216029 1986 ntBASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Upf3bQ3ULL6 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 60.2 ms