Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Sox3P53784 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Gm5525-201ENSMUST00000190438 1312 ntBASIC11.3□□□□□ -0.6
Sox3P53784 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC11.3□□□□□ -0.6
Sox3P53784 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Sox3P53784 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Sox3P53784 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC11.29□□□□□ -0.6
Sox3P53784 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC11.29□□□□□ -0.6
Sox3P53784 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC11.29□□□□□ -0.6
Sox3P53784 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC11.29□□□□□ -0.6
Sox3P53784 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC11.29□□□□□ -0.6
Sox3P53784 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Sox3P53784 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Gm3765-201ENSMUST00000130985 1447 ntBASIC11.29□□□□□ -0.6
Sox3P53784 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Sox3P53784 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC11.29□□□□□ -0.6
Sox3P53784 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Gm11246-201ENSMUST00000120880 345 ntBASIC11.29□□□□□ -0.6
Sox3P53784 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC11.29□□□□□ -0.6
Sox3P53784 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC11.29□□□□□ -0.6
Sox3P53784 Gm22442-201ENSMUST00000157256 144 ntBASIC11.29□□□□□ -0.6
Sox3P53784 1700099I09Rik-201ENSMUST00000167834 769 ntTSL 2 BASIC11.29□□□□□ -0.6
Sox3P53784 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC11.29□□□□□ -0.6
Sox3P53784 Mir7677-201ENSMUST00000184226 67 ntBASIC11.29□□□□□ -0.6
Sox3P53784 Gm5852-201ENSMUST00000194119 1021 ntBASIC11.29□□□□□ -0.6
Sox3P53784 Gm5542-201ENSMUST00000195485 1089 ntBASIC11.29□□□□□ -0.6
Sox3P53784 Gm35960-201ENSMUST00000202712 767 ntBASIC11.29□□□□□ -0.6
Sox3P53784 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Gm2517-201ENSMUST00000215651 348 ntBASIC11.29□□□□□ -0.6
Sox3P53784 Gm39404-201ENSMUST00000216350 313 ntBASIC11.29□□□□□ -0.6
Sox3P53784 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC11.29□□□□□ -0.6
Sox3P53784 AC140375.1-201ENSMUST00000225421 694 ntBASIC11.29□□□□□ -0.6
Sox3P53784 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Sox3P53784 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Actg-ps1-201ENSMUST00000099636 1124 ntBASIC11.29□□□□□ -0.6
Sox3P53784 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
Sox3P53784 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Gm37849-201ENSMUST00000194722 1881 ntBASIC11.29□□□□□ -0.6
Sox3P53784 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Sox3P53784 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Sox3P53784 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Sox3P53784 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Sox3P53784 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC11.29□□□□□ -0.6
Sox3P53784 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Sox3P53784 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Sox3P53784 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Sox3P53784 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Sox3P53784 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Sox3P53784 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Gm22133-201ENSMUST00000102082 109 ntBASIC11.28□□□□□ -0.6
Sox3P53784 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Sox3P53784 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Sox3P53784 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC11.28□□□□□ -0.6
Sox3P53784 Gm14921-201ENSMUST00000118643 908 ntBASIC11.28□□□□□ -0.6
Sox3P53784 Gm12948-201ENSMUST00000119406 682 ntBASIC11.28□□□□□ -0.6
Sox3P53784 Gm14585-201ENSMUST00000120713 634 ntBASIC11.28□□□□□ -0.6
Sox3P53784 Gm12516-201ENSMUST00000120819 385 ntBASIC11.28□□□□□ -0.6
Sox3P53784 Gm12291-201ENSMUST00000121627 311 ntBASIC11.28□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms