Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Gm4780-202ENSMUST00000215200 2644 ntBASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Gm7851-201ENSMUST00000117574 323 ntBASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Gm9062-201ENSMUST00000117712 727 ntBASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Vps28Q9D1C8 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Epha5-205ENSMUST00000113403 4675 ntAPPRIS P5 TSL 5 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Cast-211ENSMUST00000223206 5141 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Mir680-2-201ENSMUST00000102163 110 ntBASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Gm23251-201ENSMUST00000103773 110 ntBASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Gm15207-201ENSMUST00000119259 442 ntBASIC12.05□□□□□ -0.48
Vps28Q9D1C8 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Ighv1-48-201ENSMUST00000191795 294 ntBASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Gm37246-201ENSMUST00000192665 835 ntBASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Gm6905-201ENSMUST00000205729 511 ntBASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Gm45575-201ENSMUST00000210283 548 ntBASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Vps28Q9D1C8 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gm19692-201ENSMUST00000203856 2084 ntBASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Vps28Q9D1C8 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms