Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Gm5866-201ENSMUST00000177881 973 ntBASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 AC154687.2-201ENSMUST00000223853 640 ntBASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 AC192088.1-201ENSMUST00000227561 301 ntBASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Nutf2-ps1-201ENSMUST00000095978 864 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Gm26527-201ENSMUST00000180416 1948 ntTSL 5 BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Gm42602-201ENSMUST00000200288 3224 ntBASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Anxa7-201ENSMUST00000065504 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Slc1a2-202ENSMUST00000080210 11595 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Dpf2-202ENSMUST00000118623 2406 ntTSL 5 BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Gm44798-201ENSMUST00000208123 2410 ntBASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Slc17a5-201ENSMUST00000052441 3236 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Zcchc12-202ENSMUST00000115256 2197 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Capn15-204ENSMUST00000212149 4555 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Galnt16-206ENSMUST00000219993 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Gm13938-201ENSMUST00000156809 493 ntTSL 5 BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Tfap2b-204ENSMUST00000187754 3023 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Apobec3-204ENSMUST00000175714 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Abt1-201ENSMUST00000041782 4456 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 4930512J16Rik-201ENSMUST00000203704 1859 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Kcnip3-203ENSMUST00000103215 2732 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Kcnip3-201ENSMUST00000028850 2728 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 D930020B18Rik-201ENSMUST00000120642 3335 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Col4a3-201ENSMUST00000113457 8554 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ccdc9Q8VC31 Ankrd11-201ENSMUST00000098333 7995 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Dcun1d2-202ENSMUST00000110838 2955 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Henmt1-203ENSMUST00000106586 1838 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Stat5a-202ENSMUST00000107356 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Uba52-ps-201ENSMUST00000183770 379 ntBASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Gm4034-201ENSMUST00000187674 480 ntBASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Fcrl1-204ENSMUST00000191666 925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Gm37597-201ENSMUST00000191853 382 ntBASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Gm7558-201ENSMUST00000193221 1165 ntBASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Gm17870-201ENSMUST00000219489 1174 ntBASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Trappc9-202ENSMUST00000089770 4047 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Sipa1l3-215ENSMUST00000183096 7713 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Sipa1l3-201ENSMUST00000085809 7713 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Pex2-203ENSMUST00000164828 2051 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Nfasc-203ENSMUST00000163770 3903 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Sirpa-201ENSMUST00000049262 3644 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Atp6v0e2-202ENSMUST00000203011 1612 ntTSL 2 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 AC174797.1-201ENSMUST00000224339 1649 ntBASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Zdbf2-202ENSMUST00000114132 12629 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Psd4-201ENSMUST00000056641 4748 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 AC154527.2-201ENSMUST00000225256 1466 ntBASIC14.11□□□□□ -0.15
Ccdc9Q8VC31 Acacb-202ENSMUST00000102582 8788 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms