Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Rin1-201ENSMUST00000025818 4184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Scml2-201ENSMUST00000019101 4842 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Gm25214-201ENSMUST00000104573 129 ntBASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Gm5850-201ENSMUST00000192923 1206 ntBASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Ranbp10-201ENSMUST00000041400 5308 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Jmjd4-202ENSMUST00000108777 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Msh5-202ENSMUST00000097338 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Enpp4-201ENSMUST00000024757 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Fut8-203ENSMUST00000177595 2980 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC12.36□□□□□ -0.43
Ccdc28aQ8CEI3 Tmod2-201ENSMUST00000064433 9884 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Cdc42ep4-201ENSMUST00000053536 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Gm36940-201ENSMUST00000194281 2036 ntBASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 B930036N10Rik-202ENSMUST00000181170 3544 ntBASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 CT571245.2-201ENSMUST00000218421 305 ntBASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Gm7841-201ENSMUST00000122108 1629 ntBASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Mad1l1-201ENSMUST00000031534 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Zfp68-203ENSMUST00000110905 4749 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc28aQ8CEI3 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Cyp11b1-201ENSMUST00000170259 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Gm37422-201ENSMUST00000193794 4718 ntBASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Gm14644-201ENSMUST00000116671 647 ntBASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc28aQ8CEI3 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms