Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Gm18263-201ENSMUST00000220846 1928 ntBASIC13.84□□□□□ -0.19
Trim56Q80VI1 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Olfr1258-202ENSMUST00000111516 936 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC13.84□□□□□ -0.19
Trim56Q80VI1 Gm12407-201ENSMUST00000180219 324 ntBASIC13.84□□□□□ -0.19
Trim56Q80VI1 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Gm3786-201ENSMUST00000202659 378 ntBASIC13.84□□□□□ -0.19
Trim56Q80VI1 Gm43947-201ENSMUST00000203019 959 ntBASIC13.84□□□□□ -0.19
Trim56Q80VI1 Olfr1415-203ENSMUST00000204766 403 ntTSL 3 BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Gm18393-201ENSMUST00000208349 1131 ntBASIC13.84□□□□□ -0.19
Trim56Q80VI1 Gm4797-201ENSMUST00000219075 1283 ntBASIC13.84□□□□□ -0.19
Trim56Q80VI1 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Trim56Q80VI1 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC13.83□□□□□ -0.19
Trim56Q80VI1 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Trim56Q80VI1 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
Trim56Q80VI1 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Trim56Q80VI1 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
Trim56Q80VI1 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
Trim56Q80VI1 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Trim56Q80VI1 AC124397.2-201ENSMUST00000225575 2215 ntBASIC13.83□□□□□ -0.2
Trim56Q80VI1 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Gm20495-201ENSMUST00000173902 235 ntBASIC13.83□□□□□ -0.2
Trim56Q80VI1 Gm10807-201ENSMUST00000177134 795 ntBASIC13.83□□□□□ -0.2
Trim56Q80VI1 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Mir8115-201ENSMUST00000184992 119 ntBASIC13.83□□□□□ -0.2
Trim56Q80VI1 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC13.83□□□□□ -0.2
Trim56Q80VI1 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC13.83□□□□□ -0.2
Trim56Q80VI1 AC166992.1-201ENSMUST00000216356 565 ntBASIC13.83□□□□□ -0.2
Trim56Q80VI1 Lect2-202ENSMUST00000225183 823 ntBASIC13.83□□□□□ -0.2
Trim56Q80VI1 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Enpp5-201ENSMUST00000024756 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
Trim56Q80VI1 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Gm5150-201ENSMUST00000108347 913 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Gm14071-201ENSMUST00000117817 509 ntBASIC13.82□□□□□ -0.2
Trim56Q80VI1 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC13.82□□□□□ -0.2
Trim56Q80VI1 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Gm42997-202ENSMUST00000200321 985 ntBASIC13.82□□□□□ -0.2
Trim56Q80VI1 Gm8959-201ENSMUST00000213150 571 ntBASIC13.82□□□□□ -0.2
Trim56Q80VI1 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim56Q80VI1 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 69.8 ms