Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
Vps54Q5SPW0 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
Vps54Q5SPW0 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps54Q5SPW0 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps54Q5SPW0 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Vps54Q5SPW0 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Vps54Q5SPW0 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps54Q5SPW0 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps54Q5SPW0 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps54Q5SPW0 Lrig2-201ENSMUST00000046316 7099 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Vps54Q5SPW0 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Vps54Q5SPW0 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Vps54Q5SPW0 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Vps54Q5SPW0 Gm13990-201ENSMUST00000151391 2701 ntTSL 5 BASIC14.08□□□□□ -0.15
Vps54Q5SPW0 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Vps54Q5SPW0 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Gm22920-201ENSMUST00000102175 109 ntBASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Gm14193-201ENSMUST00000105067 153 ntBASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Gm7666-201ENSMUST00000146631 819 ntBASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Gm37986-201ENSMUST00000193285 383 ntBASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 AC166992.1-201ENSMUST00000216356 565 ntBASIC14.08□□□□□ -0.16
Vps54Q5SPW0 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Flywch1-201ENSMUST00000045517 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Vps54Q5SPW0 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Gm22711-201ENSMUST00000116890 133 ntBASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Gm13328-201ENSMUST00000120816 1020 ntBASIC14.07□□□□□ -0.16
Vps54Q5SPW0 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Vmn1r205-201ENSMUST00000185475 951 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Gm4797-201ENSMUST00000219075 1283 ntBASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Orc4-202ENSMUST00000090976 1153 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 CT009489.1-201ENSMUST00000227740 1893 ntBASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Vps54Q5SPW0 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Gm12176-201ENSMUST00000121420 875 ntBASIC14.06□□□□□ -0.16
Vps54Q5SPW0 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Gm4726-201ENSMUST00000135604 736 ntBASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Gm6019-201ENSMUST00000148369 736 ntBASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Gm22902-201ENSMUST00000158488 302 ntBASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Gm12407-201ENSMUST00000180219 324 ntBASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Gm14267-206ENSMUST00000226870 1209 ntBASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Vps54Q5SPW0 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms