Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC13.03□□□□□ -0.32
Col6a1Q04857 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Gm2420-201ENSMUST00000119864 2149 ntBASIC13.03□□□□□ -0.32
Col6a1Q04857 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Col6a1Q04857 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Col6a1Q04857 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col6a1Q04857 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
Col6a1Q04857 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.32
Col6a1Q04857 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col6a1Q04857 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col6a1Q04857 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
Col6a1Q04857 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col6a1Q04857 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col6a1Q04857 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Col6a1Q04857 Gm5780-201ENSMUST00000217774 1834 ntBASIC13.02□□□□□ -0.32
Col6a1Q04857 Gm43051-201ENSMUST00000201096 2678 ntBASIC13.02□□□□□ -0.32
Col6a1Q04857 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Col6a1Q04857 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col6a1Q04857 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col6a1Q04857 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Col6a1Q04857 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC13.02□□□□□ -0.33
Col6a1Q04857 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC13.02□□□□□ -0.33
Col6a1Q04857 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Rbm3os-201ENSMUST00000124018 839 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC13.02□□□□□ -0.33
Col6a1Q04857 Gm26989-201ENSMUST00000182608 749 ntBASIC13.02□□□□□ -0.33
Col6a1Q04857 Gm29418-201ENSMUST00000186162 647 ntTSL 5 BASIC13.02□□□□□ -0.33
Col6a1Q04857 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC13.02□□□□□ -0.33
Col6a1Q04857 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC13.02□□□□□ -0.33
Col6a1Q04857 Gm45410-201ENSMUST00000211331 1093 ntBASIC13.02□□□□□ -0.33
Col6a1Q04857 Gm46336-201ENSMUST00000221894 279 ntTSL 5 BASIC13.02□□□□□ -0.33
Col6a1Q04857 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Col6a1Q04857 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Zfp68-201ENSMUST00000063262 2254 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC13.02□□□□□ -0.33
Col6a1Q04857 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC13.02□□□□□ -0.33
Col6a1Q04857 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col6a1Q04857 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Gm7224-201ENSMUST00000121359 2066 ntBASIC13.01□□□□□ -0.33
Col6a1Q04857 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Col6a1Q04857 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC13.01□□□□□ -0.33
Col6a1Q04857 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Atp6v1g2-202ENSMUST00000118384 483 ntTSL 2 BASIC13.01□□□□□ -0.33
Col6a1Q04857 Gm12943-201ENSMUST00000119616 210 ntBASIC13.01□□□□□ -0.33
Col6a1Q04857 Gm11660-201ENSMUST00000120955 412 ntBASIC13.01□□□□□ -0.33
Col6a1Q04857 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC13.01□□□□□ -0.33
Col6a1Q04857 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC13.01□□□□□ -0.33
Col6a1Q04857 Spink2-201ENSMUST00000065216 631 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Gm5537-201ENSMUST00000091117 1252 ntBASIC13.01□□□□□ -0.33
Col6a1Q04857 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC13.01□□□□□ -0.33
Col6a1Q04857 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC13.01□□□□□ -0.33
Col6a1Q04857 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Gm1995-201ENSMUST00000220838 2602 ntBASIC13.01□□□□□ -0.33
Col6a1Q04857 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC13.01□□□□□ -0.33
Col6a1Q04857 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Col6a1Q04857 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Paupar-201ENSMUST00000194826 3482 ntBASIC13.01□□□□□ -0.33
Col6a1Q04857 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col6a1Q04857 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC13□□□□□ -0.33
Col6a1Q04857 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC13□□□□□ -0.33
Col6a1Q04857 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC13□□□□□ -0.33
Col6a1Q04857 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Col6a1Q04857 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 155.8 ms