Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Gm24248-201ENSMUST00000157321 322 ntBASIC13.17□□□□□ -0.3
Col2a1P28481 Dydc1-202ENSMUST00000161837 829 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Col2a1P28481 Ighv2-1-201ENSMUST00000170946 353 ntBASIC13.17□□□□□ -0.3
Col2a1P28481 Rn7s6-201ENSMUST00000175005 291 ntBASIC13.17□□□□□ -0.3
Col2a1P28481 AC238811.4-201ENSMUST00000178019 1246 ntBASIC13.17□□□□□ -0.3
Col2a1P28481 AC238940.3-201ENSMUST00000178830 1246 ntBASIC13.17□□□□□ -0.3
Col2a1P28481 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC13.17□□□□□ -0.3
Col2a1P28481 AC122024.3-201ENSMUST00000217719 294 ntBASIC13.17□□□□□ -0.3
Col2a1P28481 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Col2a1P28481 n-R5s185-201ENSMUST00000083953 119 ntBASIC13.17□□□□□ -0.3
Col2a1P28481 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col2a1P28481 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col2a1P28481 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC13.17□□□□□ -0.3
Col2a1P28481 Gm45218-201ENSMUST00000205533 1678 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col2a1P28481 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Col2a1P28481 Gm6157-201ENSMUST00000199935 1897 ntBASIC13.17□□□□□ -0.3
Col2a1P28481 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col2a1P28481 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col2a1P28481 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col2a1P28481 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col2a1P28481 Prf1-201ENSMUST00000035419 1968 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col2a1P28481 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Col2a1P28481 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col2a1P28481 Pax5-205ENSMUST00000107827 1315 ntTSL 5 BASIC13.17□□□□□ -0.3
Col2a1P28481 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col2a1P28481 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Col2a1P28481 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Col2a1P28481 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Col2a1P28481 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Col2a1P28481 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Col2a1P28481 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm43001-201ENSMUST00000198925 603 ntTSL 3 BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm43912-201ENSMUST00000204352 538 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Gm7525-201ENSMUST00000219425 454 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Id2-203ENSMUST00000222667 958 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 AC154572.1-201ENSMUST00000226098 1204 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC13.16□□□□□ -0.3
Col2a1P28481 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Eef1a1-201ENSMUST00000042235 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm44755-201ENSMUST00000207830 2102 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Col2a1P28481 4833422M21Rik-203ENSMUST00000181747 1365 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
Col2a1P28481 Akr1c6-201ENSMUST00000021630 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm43102-201ENSMUST00000201004 2324 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm37651-201ENSMUST00000194679 1494 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm12628-201ENSMUST00000122193 382 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Fam187b-203ENSMUST00000129773 1213 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm22379-201ENSMUST00000157480 131 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Bhmt-ps1-201ENSMUST00000178743 1224 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm37638-201ENSMUST00000194337 1123 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Gm19166-201ENSMUST00000196041 1063 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Gm43671-201ENSMUST00000200422 433 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Gm5298-201ENSMUST00000201122 892 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Gm18059-201ENSMUST00000208073 580 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm45572-201ENSMUST00000211774 750 ntTSL 5 BASIC13.16□□□□□ -0.3
Col2a1P28481 AC154305.2-201ENSMUST00000225813 901 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Myoz2-201ENSMUST00000029761 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Col2a1P28481 Krtap4-1-201ENSMUST00000081007 1015 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Col2a1P28481 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Gm18798-201ENSMUST00000187264 1700 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC13.16□□□□□ -0.3
Col2a1P28481 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Col2a1P28481 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
Col2a1P28481 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col2a1P28481 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col2a1P28481 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col2a1P28481 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Col2a1P28481 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col2a1P28481 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col2a1P28481 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col2a1P28481 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col2a1P28481 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Col2a1P28481 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC13.15□□□□□ -0.3
Col2a1P28481 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Col2a1P28481 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms