Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Chd3B1AR17 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC11.52□□□□□ -0.57
Chd3B1AR17 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Chd3B1AR17 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC11.52□□□□□ -0.57
Chd3B1AR17 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC11.52□□□□□ -0.57
Chd3B1AR17 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Chd3B1AR17 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC11.52□□□□□ -0.57
Chd3B1AR17 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Chd3B1AR17 Gm15744-201ENSMUST00000161734 213 ntBASIC11.51□□□□□ -0.57
Chd3B1AR17 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Arhgef33-207ENSMUST00000224966 490 ntBASIC11.51□□□□□ -0.57
Chd3B1AR17 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Hif3a-202ENSMUST00000108492 6402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC11.51□□□□□ -0.57
Chd3B1AR17 Lsamp-208ENSMUST00000189358 2766 ntTSL 5 BASIC11.51□□□□□ -0.57
Chd3B1AR17 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Chd3B1AR17 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC11.51□□□□□ -0.57
Chd3B1AR17 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Rwdd3-205ENSMUST00000106467 1158 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Gm15764-201ENSMUST00000150389 672 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Gm8815-201ENSMUST00000173809 620 ntBASIC11.51□□□□□ -0.57
Chd3B1AR17 Gm28388-201ENSMUST00000186262 437 ntBASIC11.51□□□□□ -0.57
Chd3B1AR17 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC11.51□□□□□ -0.57
Chd3B1AR17 Gm37905-201ENSMUST00000195310 341 ntBASIC11.51□□□□□ -0.57
Chd3B1AR17 1110019B22Rik-202ENSMUST00000218396 989 ntTSL 5 BASIC11.51□□□□□ -0.57
Chd3B1AR17 AC164618.2-201ENSMUST00000224770 573 ntBASIC11.51□□□□□ -0.57
Chd3B1AR17 Gm6430-201ENSMUST00000054664 1248 ntBASIC11.51□□□□□ -0.57
Chd3B1AR17 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC11.51□□□□□ -0.57
Chd3B1AR17 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Zc3h7b-201ENSMUST00000109554 5958 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Gm37600-201ENSMUST00000193764 3292 ntBASIC11.51□□□□□ -0.57
Chd3B1AR17 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Chd3B1AR17 Gm9387-201ENSMUST00000098624 1320 ntBASIC11.51□□□□□ -0.57
Chd3B1AR17 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Chd3B1AR17 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Gm17213-201ENSMUST00000165161 1360 ntBASIC11.5□□□□□ -0.57
Chd3B1AR17 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Gm13888-201ENSMUST00000119148 422 ntBASIC11.5□□□□□ -0.57
Chd3B1AR17 Mir1901-201ENSMUST00000122616 78 ntBASIC11.5□□□□□ -0.57
Chd3B1AR17 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC11.5□□□□□ -0.57
Chd3B1AR17 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Chd3B1AR17 Gm44831-201ENSMUST00000208469 2989 ntBASIC11.5□□□□□ -0.57
Chd3B1AR17 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC11.5□□□□□ -0.57
Chd3B1AR17 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Chd3B1AR17 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Chd3B1AR17 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC11.5□□□□□ -0.57
Chd3B1AR17 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC11.5□□□□□ -0.57
Chd3B1AR17 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC11.5□□□□□ -0.57
Chd3B1AR17 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
Chd3B1AR17 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Chd3B1AR17 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Chd3B1AR17 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC11.5□□□□□ -0.57
Chd3B1AR17 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 34.2 ms