Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Nrd1-203ENSMUST00000106644 3784 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Gm11793-201ENSMUST00000120433 981 ntBASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Gm13570-201ENSMUST00000140763 309 ntBASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Mospd4-201ENSMUST00000180618 576 ntBASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 AC126253.1-202ENSMUST00000226732 835 ntBASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Tctn1-201ENSMUST00000111738 5717 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Cldn19-202ENSMUST00000094823 4168 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Tm9sf1-202ENSMUST00000120041 2164 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Acvrl1-201ENSMUST00000000542 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Gm2673-201ENSMUST00000120958 1608 ntBASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Cdc20b-203ENSMUST00000181117 1608 ntAPPRIS ALT2 TSL 5 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Lama4-201ENSMUST00000019992 6046 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Chrm1-202ENSMUST00000163785 6271 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Sh3pxd2a-201ENSMUST00000081619 10464 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 1700017B05Rik-202ENSMUST00000213199 3722 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Ddx28Q9CWT6 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Zfp217-202ENSMUST00000109155 5670 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Kcnh3-201ENSMUST00000041415 3583 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Imp4-201ENSMUST00000027303 5836 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 3425401B19Rik-201ENSMUST00000096038 5547 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Car12-202ENSMUST00000085420 3639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Gimap8-202ENSMUST00000203083 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Pck2-201ENSMUST00000048781 3400 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 AC122197.2-201ENSMUST00000219196 1635 ntBASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Gphb5-201ENSMUST00000051079 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Cox17-202ENSMUST00000120495 3690 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Slc38a3-203ENSMUST00000177567 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Slc38a3-209ENSMUST00000193932 2463 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Map4-203ENSMUST00000163979 3320 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Gm2606-201ENSMUST00000100754 1002 ntBASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Gm12286-201ENSMUST00000119246 1002 ntBASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Gm13786-201ENSMUST00000122371 333 ntBASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 1700066O22Rik-203ENSMUST00000150994 961 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Gm42599-201ENSMUST00000201308 469 ntBASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Gm43999-201ENSMUST00000204286 2889 ntBASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 L1cam-202ENSMUST00000102871 5113 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Brd1-202ENSMUST00000109380 3259 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC11.07□□□□□ -0.64
Ddx28Q9CWT6 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms