Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Arid2-201ENSMUST00000096250 8507 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Aktip-203ENSMUST00000120349 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Steap3-203ENSMUST00000112641 5158 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Bace2-201ENSMUST00000047275 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Sf3b5-201ENSMUST00000105139 3841 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Pomgnt1-204ENSMUST00000120083 2953 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ccdc9Q8VC31 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Hsd17b13-202ENSMUST00000112803 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Golga2-203ENSMUST00000113377 4361 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Gm37057-201ENSMUST00000192624 1916 ntBASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Klhl3-201ENSMUST00000091583 6871 ntTSL 5 BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Tesk2-202ENSMUST00000106456 2430 ntTSL 5 BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Gm16387-201ENSMUST00000180990 2632 ntBASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Lima1-201ENSMUST00000073691 4215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Vars2-201ENSMUST00000043674 4425 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Inpp5j-201ENSMUST00000044507 3370 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Nln-205ENSMUST00000224945 2486 ntBASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Chd3-202ENSMUST00000108661 7261 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Dcun1d4-203ENSMUST00000113558 4023 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Calhm3-201ENSMUST00000178630 1044 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Gm6218-201ENSMUST00000219812 628 ntBASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Sept9-203ENSMUST00000100193 2924 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Celf5-202ENSMUST00000119060 4166 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 F730311O21Rik-201ENSMUST00000189288 5447 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Gm5420-201ENSMUST00000071008 2206 ntTSL 2 BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Idua-202ENSMUST00000112563 3373 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Slc25a51-201ENSMUST00000107796 4433 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Pklr-201ENSMUST00000047111 2787 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Gm3836-201ENSMUST00000211377 1613 ntBASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Dzip1l-203ENSMUST00000112885 4350 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Man2c1-201ENSMUST00000034836 3215 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Txk-201ENSMUST00000113604 2260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ccdc9Q8VC31 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.15
Ccdc9Q8VC31 Pnpla3-201ENSMUST00000045289 4640 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Sept9-204ENSMUST00000106349 2932 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Ccdc136-208ENSMUST00000180829 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Sptb-202ENSMUST00000166101 8084 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Nit1-201ENSMUST00000111289 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Sap30bpos-201ENSMUST00000132264 2352 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Colq-201ENSMUST00000112027 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Cux1-211ENSMUST00000176745 2831 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Gm12291-201ENSMUST00000121627 311 ntBASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Pak7-201ENSMUST00000035264 4848 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Prr5l-210ENSMUST00000171088 4296 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Speer4b-201ENSMUST00000053257 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Nfkbiz-202ENSMUST00000096026 4067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Phf8-211ENSMUST00000168501 6359 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Sdccag8-201ENSMUST00000027785 2776 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Wisp3-201ENSMUST00000076713 1419 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Ppp1r26-205ENSMUST00000189694 5463 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Ppp1r26-201ENSMUST00000040324 5466 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Tctn3-201ENSMUST00000025981 2743 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ccdc9Q8VC31 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Hcar2-201ENSMUST00000057145 1930 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Gm38054-201ENSMUST00000192380 2167 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Kdm4a-204ENSMUST00000106406 4663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Gm43086-201ENSMUST00000202536 2657 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Ccdc136-202ENSMUST00000115275 3279 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Rfesd-201ENSMUST00000050997 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ccdc9Q8VC31 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms