Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Clrn1Q8K445 AC164107.1-201ENSMUST00000227730 2161 ntBASIC11.11□□□□□ -0.63
Clrn1Q8K445 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Clrn1Q8K445 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Clrn1Q8K445 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Clrn1Q8K445 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Clrn1Q8K445 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Clrn1Q8K445 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Clrn1Q8K445 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC11.11□□□□□ -0.63
Clrn1Q8K445 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Clrn1Q8K445 Paupar-201ENSMUST00000194826 3482 ntBASIC11.11□□□□□ -0.63
Clrn1Q8K445 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Clrn1Q8K445 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Clrn1Q8K445 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Clrn1Q8K445 Gm42913-201ENSMUST00000197936 1853 ntBASIC11.1□□□□□ -0.63
Clrn1Q8K445 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC11.1□□□□□ -0.63
Clrn1Q8K445 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Pag1-201ENSMUST00000108384 3729 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Fam84a-201ENSMUST00000020926 4164 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Fam210b-201ENSMUST00000028995 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Gm14208-201ENSMUST00000119645 678 ntBASIC11.1□□□□□ -0.63
Clrn1Q8K445 Gm14017-201ENSMUST00000121934 386 ntBASIC11.1□□□□□ -0.63
Clrn1Q8K445 Gm2260-201ENSMUST00000184965 657 ntBASIC11.1□□□□□ -0.63
Clrn1Q8K445 Gm7003-201ENSMUST00000195089 312 ntBASIC11.1□□□□□ -0.63
Clrn1Q8K445 Gm45186-201ENSMUST00000206874 478 ntBASIC11.1□□□□□ -0.63
Clrn1Q8K445 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Gm9797-202ENSMUST00000218003 294 ntBASIC11.1□□□□□ -0.63
Clrn1Q8K445 Gm18730-201ENSMUST00000218038 343 ntBASIC11.1□□□□□ -0.63
Clrn1Q8K445 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Gm807-202ENSMUST00000224929 408 ntBASIC11.1□□□□□ -0.63
Clrn1Q8K445 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Gm38194-201ENSMUST00000194529 2211 ntBASIC11.1□□□□□ -0.63
Clrn1Q8K445 Cd93-201ENSMUST00000099269 6677 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Cds2-201ENSMUST00000089461 8073 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Cad-211ENSMUST00000202795 6559 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Clrn1Q8K445 Map4-214ENSMUST00000199498 4055 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Gm8146-201ENSMUST00000192106 1847 ntBASIC11.09□□□□□ -0.63
Clrn1Q8K445 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Socs6-201ENSMUST00000070116 6036 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Tgfb2-206ENSMUST00000195201 3485 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Gm43773-201ENSMUST00000198548 2162 ntBASIC11.09□□□□□ -0.63
Clrn1Q8K445 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Gm11509-201ENSMUST00000117358 325 ntBASIC11.09□□□□□ -0.63
Clrn1Q8K445 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
Clrn1Q8K445 Gm14277-201ENSMUST00000121195 360 ntBASIC11.09□□□□□ -0.63
Clrn1Q8K445 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC11.09□□□□□ -0.63
Clrn1Q8K445 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC11.09□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms