Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Cog3-203ENSMUST00000227473 4197 ntBASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Gm26631-201ENSMUST00000181462 2505 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Ap4m1-201ENSMUST00000019662 3479 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Gm18222-201ENSMUST00000202416 1387 ntBASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Gm23270-201ENSMUST00000104055 131 ntBASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Gm12015-201ENSMUST00000117065 843 ntBASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Gm3893-201ENSMUST00000178882 909 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Gm43630-201ENSMUST00000201550 776 ntBASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Ccdc33-201ENSMUST00000042205 2632 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Clec16a-201ENSMUST00000038145 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Lnx1-203ENSMUST00000113531 3098 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Ccdc40Q8BI79 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Gm38901-201ENSMUST00000202448 3008 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Mmp25-201ENSMUST00000024696 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Tnip1-206ENSMUST00000108889 2834 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Ap3b2-205ENSMUST00000152355 3168 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Tm9sf1-202ENSMUST00000120041 2164 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Gm42853-201ENSMUST00000201273 1387 ntBASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Piwil1-201ENSMUST00000086056 4016 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Gm14644-201ENSMUST00000116671 647 ntBASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Gm5706-201ENSMUST00000181525 993 ntBASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Gm27516-201ENSMUST00000184237 98 ntBASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Gm6334-201ENSMUST00000207083 228 ntBASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 AC153929.1-201ENSMUST00000219009 303 ntBASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Cts7-204ENSMUST00000225321 1257 ntBASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Gm38292-201ENSMUST00000192646 3045 ntBASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Ppp1r12a-205ENSMUST00000219263 3355 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 AI854703-201ENSMUST00000095938 3517 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Fbxo40-201ENSMUST00000075869 5137 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Fsd2-201ENSMUST00000042318 3985 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Dclk3-201ENSMUST00000111879 3005 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Arhgap36-202ENSMUST00000114904 3033 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ccdc40Q8BI79 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ccdc40Q8BI79 Tesk2-201ENSMUST00000045542 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms