Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm8525-201ENSMUST00000189674 861 ntBASIC15.23■□□□□ 0.03
Col18a1P39061 Gm21631-201ENSMUST00000195041 754 ntBASIC15.23■□□□□ 0.03
Col18a1P39061 AC118639.1-202ENSMUST00000226957 653 ntBASIC15.23■□□□□ 0.03
Col18a1P39061 Fabp1-201ENSMUST00000067492 553 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col18a1P39061 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col18a1P39061 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Col18a1P39061 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col18a1P39061 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Col18a1P39061 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Col18a1P39061 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
Col18a1P39061 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC15.22■□□□□ 0.03
Col18a1P39061 4930517J16Rik-201ENSMUST00000193095 1568 ntBASIC15.22■□□□□ 0.03
Col18a1P39061 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 Gm43773-201ENSMUST00000198548 2162 ntBASIC15.22■□□□□ 0.03
Col18a1P39061 4930579F01Rik-201ENSMUST00000012186 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Col18a1P39061 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Col18a1P39061 Gm5764-201ENSMUST00000118817 885 ntBASIC15.22■□□□□ 0.03
Col18a1P39061 Spata3-205ENSMUST00000130504 1100 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 Eef1d-217ENSMUST00000151066 704 ntTSL 5 BASIC15.22■□□□□ 0.03
Col18a1P39061 Gm7805-201ENSMUST00000154348 448 ntBASIC15.22■□□□□ 0.03
Col18a1P39061 Rab26-204ENSMUST00000176533 965 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Col18a1P39061 Rpl15-ps2-201ENSMUST00000184247 613 ntBASIC15.22■□□□□ 0.03
Col18a1P39061 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Col18a1P39061 CT025618.1-201ENSMUST00000227409 1279 ntBASIC15.22■□□□□ 0.03
Col18a1P39061 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col18a1P39061 Atp6v1e1-201ENSMUST00000019354 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Col18a1P39061 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 C130083M11Rik-201ENSMUST00000197171 2072 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Col18a1P39061 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col18a1P39061 Gm13404-201ENSMUST00000156633 1960 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col18a1P39061 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC15.21■□□□□ 0.03
Col18a1P39061 Bglap3-203ENSMUST00000107543 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col18a1P39061 Gm14633-201ENSMUST00000121152 470 ntBASIC15.21■□□□□ 0.03
Col18a1P39061 Gm16288-201ENSMUST00000137940 367 ntBASIC15.21■□□□□ 0.03
Col18a1P39061 Gm9574-201ENSMUST00000173127 845 ntBASIC15.21■□□□□ 0.03
Col18a1P39061 1700026J14Rik-201ENSMUST00000180937 794 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col18a1P39061 Gm26943-201ENSMUST00000182295 957 ntBASIC15.21■□□□□ 0.03
Col18a1P39061 Ighv5-12-4-201ENSMUST00000195381 353 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Col18a1P39061 Gm40332-201ENSMUST00000199847 938 ntBASIC15.21■□□□□ 0.03
Col18a1P39061 Gm9353-201ENSMUST00000200472 604 ntBASIC15.21■□□□□ 0.03
Col18a1P39061 Gm44540-201ENSMUST00000205640 354 ntBASIC15.21■□□□□ 0.03
Col18a1P39061 Gm45745-201ENSMUST00000211447 1180 ntBASIC15.21■□□□□ 0.03
Col18a1P39061 AC132384.2-201ENSMUST00000218018 526 ntBASIC15.21■□□□□ 0.03
Col18a1P39061 Gm8618-201ENSMUST00000097570 432 ntBASIC15.21■□□□□ 0.03
Col18a1P39061 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col18a1P39061 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Col18a1P39061 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col18a1P39061 Msl1-202ENSMUST00000037930 1303 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col18a1P39061 Ms4a7-203ENSMUST00000067532 1334 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col18a1P39061 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col18a1P39061 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col18a1P39061 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Col18a1P39061 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Col18a1P39061 Exosc9-201ENSMUST00000029269 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col18a1P39061 Gm37912-201ENSMUST00000191895 3076 ntBASIC15.21■□□□□ 0.03
Col18a1P39061 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col18a1P39061 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
Col18a1P39061 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col18a1P39061 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
Col18a1P39061 Gm10842-201ENSMUST00000100338 369 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
Col18a1P39061 Gm13777-201ENSMUST00000118208 345 ntBASIC15.21■□□□□ 0.02
Col18a1P39061 Gm14997-201ENSMUST00000119232 636 ntBASIC15.21■□□□□ 0.02
Col18a1P39061 Prelid3b-203ENSMUST00000120822 622 ntTSL 3 BASIC15.21■□□□□ 0.02
Col18a1P39061 Gm15486-201ENSMUST00000135147 604 ntTSL 3 BASIC15.21■□□□□ 0.02
Col18a1P39061 Gm13817-201ENSMUST00000142249 604 ntTSL 3 BASIC15.21■□□□□ 0.02
Col18a1P39061 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Col18a1P39061 Gm32743-201ENSMUST00000214196 594 ntTSL 3 BASIC15.21■□□□□ 0.02
Col18a1P39061 Ift43-201ENSMUST00000054565 773 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col18a1P39061 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Col18a1P39061 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Col18a1P39061 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col18a1P39061 Gm45546-201ENSMUST00000211053 2394 ntBASIC15.21■□□□□ 0.02
Col18a1P39061 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Col18a1P39061 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Col18a1P39061 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC15.2■□□□□ 0.02
Col18a1P39061 Pabpc1l-201ENSMUST00000067715 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 AC122273.1-201ENSMUST00000213634 2327 ntBASIC15.2■□□□□ 0.02
Col18a1P39061 Spata16-202ENSMUST00000108305 1789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 Bpifb1-202ENSMUST00000081816 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 Gm8725-201ENSMUST00000221829 1333 ntBASIC15.2■□□□□ 0.02
Col18a1P39061 Scgb1b29-201ENSMUST00000108094 282 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col18a1P39061 Gm15015-201ENSMUST00000135491 636 ntTSL 3 BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms