Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Gm21939-201ENSMUST00000221137 2773 ntBASIC12.35□□□□□ -0.43
Usp4P35123 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Radil-203ENSMUST00000110784 3106 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Gm44755-201ENSMUST00000207830 2102 ntBASIC12.35□□□□□ -0.43
Usp4P35123 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Usp4P35123 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 4930431P19Rik-202ENSMUST00000207761 2959 ntBASIC12.35□□□□□ -0.43
Usp4P35123 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC12.35□□□□□ -0.43
Usp4P35123 Gm15446-201ENSMUST00000112544 2417 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Usp4P35123 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC12.35□□□□□ -0.43
Usp4P35123 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC12.35□□□□□ -0.43
Usp4P35123 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC12.35□□□□□ -0.43
Usp4P35123 Gm12715-201ENSMUST00000121430 1128 ntBASIC12.35□□□□□ -0.43
Usp4P35123 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC12.35□□□□□ -0.43
Usp4P35123 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC12.35□□□□□ -0.43
Usp4P35123 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC12.35□□□□□ -0.43
Usp4P35123 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Nr5a1-201ENSMUST00000028084 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Usp4P35123 Gm37580-201ENSMUST00000192408 2800 ntBASIC12.35□□□□□ -0.43
Usp4P35123 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC12.35□□□□□ -0.43
Usp4P35123 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Ndst3-202ENSMUST00000124803 1917 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Usp4P35123 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Zc3h18-205ENSMUST00000176629 3672 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Recql4-201ENSMUST00000036852 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Timm22-201ENSMUST00000021203 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Usp4P35123 Becn1-205ENSMUST00000130916 4365 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC12.34□□□□□ -0.43
Usp4P35123 Add2-207ENSMUST00000203724 3143 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Mcam-202ENSMUST00000098852 2772 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC12.34□□□□□ -0.43
Usp4P35123 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Usp4P35123 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC12.34□□□□□ -0.43
Usp4P35123 Gm14441-201ENSMUST00000121960 540 ntBASIC12.34□□□□□ -0.43
Usp4P35123 Gm13316-201ENSMUST00000140537 691 ntBASIC12.34□□□□□ -0.43
Usp4P35123 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Usp4P35123 Gm25890-201ENSMUST00000177643 165 ntBASIC12.34□□□□□ -0.43
Usp4P35123 Rnu1b2-201ENSMUST00000178073 165 ntBASIC12.34□□□□□ -0.43
Usp4P35123 Rnu1b1-201ENSMUST00000178250 165 ntBASIC12.34□□□□□ -0.43
Usp4P35123 Gm22614-201ENSMUST00000178300 165 ntBASIC12.34□□□□□ -0.43
Usp4P35123 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC12.34□□□□□ -0.43
Usp4P35123 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC12.34□□□□□ -0.43
Usp4P35123 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC12.34□□□□□ -0.43
Usp4P35123 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Rps4l-202ENSMUST00000204242 789 ntBASIC12.34□□□□□ -0.43
Usp4P35123 Gm44711-201ENSMUST00000205414 1264 ntBASIC12.34□□□□□ -0.43
Usp4P35123 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC12.34□□□□□ -0.43
Usp4P35123 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Usp4P35123 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Usp4P35123 Gm22042-201ENSMUST00000082989 165 ntBASIC12.34□□□□□ -0.43
Usp4P35123 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC12.34□□□□□ -0.43
Usp4P35123 Gm26110-201ENSMUST00000083971 165 ntBASIC12.34□□□□□ -0.43
Usp4P35123 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Usp4P35123 Tcp11l2-201ENSMUST00000020223 2725 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Sp6-201ENSMUST00000047997 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Usp4P35123 Gm9466-201ENSMUST00000218144 2246 ntBASIC12.34□□□□□ -0.43
Usp4P35123 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
Usp4P35123 Ccm2-202ENSMUST00000109721 1551 ntTSL 5 BASIC12.34□□□□□ -0.43
Usp4P35123 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC12.34□□□□□ -0.43
Usp4P35123 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.43
Usp4P35123 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms