Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gtf2ird1-204ENSMUST00000100652 3693 ntAPPRIS P4 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Plekha7-207ENSMUST00000182511 4502 ntTSL 2 BASIC9.6□□□□□ -0.87
Sdc1P18828 Gon4l-203ENSMUST00000107498 7537 ntAPPRIS P2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Pcdhgb8-201ENSMUST00000195764 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Chml-204ENSMUST00000211207 1866 ntAPPRIS P1 BASIC9.6□□□□□ -0.87
Sdc1P18828 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC9.6□□□□□ -0.87
Sdc1P18828 Trappc9-202ENSMUST00000089770 4047 ntAPPRIS P4 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Ippk-202ENSMUST00000220447 4421 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Vstm2a-201ENSMUST00000109645 3264 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC9.6□□□□□ -0.87
Sdc1P18828 C130060K24Rik-203ENSMUST00000170608 2953 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC9.6□□□□□ -0.87
Sdc1P18828 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC9.6□□□□□ -0.87
Sdc1P18828 Gm43692-201ENSMUST00000198236 1062 ntBASIC9.6□□□□□ -0.87
Sdc1P18828 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC9.6□□□□□ -0.87
Sdc1P18828 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC9.6□□□□□ -0.87
Sdc1P18828 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 AC124732.1-201ENSMUST00000221551 910 ntBASIC9.6□□□□□ -0.87
Sdc1P18828 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Zfp646-201ENSMUST00000050383 6310 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Gm19178-201ENSMUST00000217524 1819 ntBASIC9.6□□□□□ -0.87
Sdc1P18828 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Adam12-201ENSMUST00000067680 7675 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Dlec1-208ENSMUST00000165231 5263 ntAPPRIS P2 TSL 5 BASIC9.6□□□□□ -0.87
Sdc1P18828 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
Sdc1P18828 Esr2-205ENSMUST00000218621 3342 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC9.6□□□□□ -0.87
Sdc1P18828 Fam228a-201ENSMUST00000111154 3004 ntAPPRIS P2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Myo18a-224ENSMUST00000172303 6339 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Trim46-203ENSMUST00000107464 3252 ntTSL 5 BASIC9.6□□□□□ -0.87
Sdc1P18828 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC9.6□□□□□ -0.87
Sdc1P18828 Apbb1-217ENSMUST00000191011 2712 ntAPPRIS ALT1 TSL 1 (best) BASIC9.6□□□□□ -0.87
Sdc1P18828 Olfr1349-207ENSMUST00000216447 2448 ntAPPRIS P1 TSL 5 BASIC9.6□□□□□ -0.87
Sdc1P18828 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Themis2-201ENSMUST00000045154 3079 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Col6a3-201ENSMUST00000056925 10106 ntTSL 5 BASIC9.59□□□□□ -0.87
Sdc1P18828 Madd-202ENSMUST00000066473 5974 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
Sdc1P18828 Gm18798-201ENSMUST00000187264 1700 ntBASIC9.59□□□□□ -0.87
Sdc1P18828 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC9.59□□□□□ -0.87
Sdc1P18828 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Gm5420-201ENSMUST00000071008 2206 ntTSL 2 BASIC9.59□□□□□ -0.87
Sdc1P18828 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
Sdc1P18828 Notch2-201ENSMUST00000079812 10500 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Emp1-201ENSMUST00000032330 2721 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC9.59□□□□□ -0.87
Sdc1P18828 Atxn1-201ENSMUST00000091628 10569 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Cad-211ENSMUST00000202795 6559 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Kcne2-201ENSMUST00000047383 1690 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Mlc1-202ENSMUST00000109368 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Ern1-201ENSMUST00000001059 6946 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Mup-ps23-201ENSMUST00000118063 630 ntBASIC9.59□□□□□ -0.87
Sdc1P18828 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC9.59□□□□□ -0.87
Sdc1P18828 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC9.59□□□□□ -0.87
Sdc1P18828 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC9.59□□□□□ -0.87
Sdc1P18828 Phf8-211ENSMUST00000168501 6359 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
Sdc1P18828 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Gm5706-201ENSMUST00000181525 993 ntBASIC9.59□□□□□ -0.87
Sdc1P18828 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC9.59□□□□□ -0.87
Sdc1P18828 AC156560.2-201ENSMUST00000221232 264 ntBASIC9.59□□□□□ -0.87
Sdc1P18828 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC9.59□□□□□ -0.87
Sdc1P18828 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Sgsm1-202ENSMUST00000057209 4339 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Myo18a-211ENSMUST00000130627 6202 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
Sdc1P18828 Pak7-201ENSMUST00000035264 4848 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Chst15-202ENSMUST00000080215 4813 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC9.59□□□□□ -0.87
Sdc1P18828 Phip-201ENSMUST00000034787 10756 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Pard3-213ENSMUST00000160766 4949 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
Sdc1P18828 Prpf6-203ENSMUST00000136481 3048 ntAPPRIS P1 TSL 5 BASIC9.59□□□□□ -0.87
Sdc1P18828 Dcun1d4-203ENSMUST00000113558 4023 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Ltbp1-203ENSMUST00000112516 5140 ntAPPRIS P3 TSL 5 BASIC9.59□□□□□ -0.87
Sdc1P18828 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
Sdc1P18828 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC9.59□□□□□ -0.87
Sdc1P18828 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
Sdc1P18828 Calu-201ENSMUST00000031779 3229 ntAPPRIS P5 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Cfb-207ENSMUST00000176203 2733 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Gm13694-201ENSMUST00000178533 2493 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
Sdc1P18828 Gm13693-201ENSMUST00000178960 2493 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
Sdc1P18828 Gm13698-202ENSMUST00000179192 2493 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
Sdc1P18828 Gm13696-202ENSMUST00000180347 2493 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
Sdc1P18828 Gm13691-201ENSMUST00000099947 2493 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
Sdc1P18828 Gm13697-201ENSMUST00000099948 2493 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
Sdc1P18828 Gm13695-201ENSMUST00000099951 2493 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
Sdc1P18828 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Clp1-203ENSMUST00000165219 2564 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
Sdc1P18828 Slco5a1-201ENSMUST00000115402 3690 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms