Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Tcp10a-202ENSMUST00000128533 2589 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Sptan1-204ENSMUST00000113717 7958 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Adamts9-201ENSMUST00000113438 8016 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Tnip1-206ENSMUST00000108889 2834 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Mageb4-202ENSMUST00000113969 2403 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Mageb4-201ENSMUST00000096378 2401 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Tacc2-205ENSMUST00000207282 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC11.28□□□□□ -0.6
Lire1P11260 Gm12502-201ENSMUST00000120197 444 ntBASIC11.28□□□□□ -0.6
Lire1P11260 Gm13665-201ENSMUST00000120830 528 ntBASIC11.28□□□□□ -0.6
Lire1P11260 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Gm24990-201ENSMUST00000157406 323 ntBASIC11.28□□□□□ -0.6
Lire1P11260 Ighv8-10-201ENSMUST00000199579 358 ntBASIC11.28□□□□□ -0.6
Lire1P11260 Gm45186-201ENSMUST00000206874 478 ntBASIC11.28□□□□□ -0.6
Lire1P11260 Gm9445-201ENSMUST00000207454 1285 ntBASIC11.28□□□□□ -0.6
Lire1P11260 Gm45635-201ENSMUST00000211516 2134 ntBASIC11.28□□□□□ -0.6
Lire1P11260 Gm9004-201ENSMUST00000218739 1222 ntBASIC11.28□□□□□ -0.6
Lire1P11260 Gm18615-201ENSMUST00000222919 1031 ntBASIC11.28□□□□□ -0.6
Lire1P11260 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Atp1a3-205ENSMUST00000196684 3642 ntTSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Tox4-201ENSMUST00000022766 5350 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Tubgcp6-201ENSMUST00000041656 5357 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Cmya5-201ENSMUST00000062122 11850 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Armc3-202ENSMUST00000114640 2818 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Grin2b-202ENSMUST00000111905 7484 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Lire1P11260 Gm9333-201ENSMUST00000205452 1323 ntBASIC11.28□□□□□ -0.6
Lire1P11260 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Dus4l-201ENSMUST00000020977 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
Lire1P11260 Acvrl1-201ENSMUST00000000542 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC11.28□□□□□ -0.6
Lire1P11260 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Lire1P11260 Satb1-207ENSMUST00000140979 3748 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Lire1P11260 Ndst1-201ENSMUST00000169273 6070 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lire1P11260 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lire1P11260 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.6
Lire1P11260 Sla2-202ENSMUST00000109561 2634 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lire1P11260 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lire1P11260 Atp1a3-201ENSMUST00000080882 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lire1P11260 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Lire1P11260 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC11.27□□□□□ -0.61
Lire1P11260 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Tbc1d14-202ENSMUST00000124036 2765 ntTSL 5 BASIC11.27□□□□□ -0.61
Lire1P11260 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC11.27□□□□□ -0.61
Lire1P11260 Ankrd1-201ENSMUST00000025718 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC11.27□□□□□ -0.61
Lire1P11260 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC11.27□□□□□ -0.61
Lire1P11260 Lcn6-203ENSMUST00000114199 729 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Gm11930-201ENSMUST00000117788 190 ntBASIC11.27□□□□□ -0.61
Lire1P11260 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC11.27□□□□□ -0.61
Lire1P11260 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC11.27□□□□□ -0.61
Lire1P11260 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Gm8099-201ENSMUST00000200510 742 ntBASIC11.27□□□□□ -0.61
Lire1P11260 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Lire1P11260 Gm44772-201ENSMUST00000207623 1191 ntBASIC11.27□□□□□ -0.61
Lire1P11260 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Gm32025-201ENSMUST00000217960 307 ntBASIC11.27□□□□□ -0.61
Lire1P11260 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC11.27□□□□□ -0.61
Lire1P11260 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC11.27□□□□□ -0.61
Lire1P11260 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Lire1P11260 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Lire1P11260 Gm13398-201ENSMUST00000149378 2837 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 56.3 ms