Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm33366-201ENSMUST00000195583 3827 ntBASIC13.9□□□□□ -0.18
Col3a1P08121 Arhgef3-204ENSMUST00000225949 3198 ntBASIC13.9□□□□□ -0.18
Col3a1P08121 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Oprl1-204ENSMUST00000108767 1248 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC13.9□□□□□ -0.18
Col3a1P08121 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC13.9□□□□□ -0.18
Col3a1P08121 Ighv2-1-201ENSMUST00000170946 353 ntBASIC13.9□□□□□ -0.18
Col3a1P08121 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC13.9□□□□□ -0.18
Col3a1P08121 Gm4895-201ENSMUST00000181646 1137 ntBASIC13.9□□□□□ -0.18
Col3a1P08121 Gm9116-201ENSMUST00000192400 1018 ntBASIC13.9□□□□□ -0.18
Col3a1P08121 Gm34973-201ENSMUST00000217087 572 ntTSL 3 BASIC13.9□□□□□ -0.18
Col3a1P08121 Gm19046-201ENSMUST00000221263 1298 ntBASIC13.9□□□□□ -0.18
Col3a1P08121 Gm18968-201ENSMUST00000221319 862 ntBASIC13.9□□□□□ -0.18
Col3a1P08121 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Ythdf2-203ENSMUST00000152796 4129 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Klhl6-201ENSMUST00000058839 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC13.9□□□□□ -0.18
Col3a1P08121 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC13.9□□□□□ -0.18
Col3a1P08121 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Col3a1P08121 Olfr322-204ENSMUST00000214392 4779 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Col3a1P08121 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Col3a1P08121 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Col3a1P08121 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Gm25053-201ENSMUST00000103982 133 ntBASIC13.89□□□□□ -0.19
Col3a1P08121 Gm25922-201ENSMUST00000104281 130 ntBASIC13.89□□□□□ -0.19
Col3a1P08121 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Col3a1P08121 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Col3a1P08121 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Col3a1P08121 Gm25545-201ENSMUST00000122673 323 ntBASIC13.89□□□□□ -0.19
Col3a1P08121 Gm24679-201ENSMUST00000158762 111 ntBASIC13.89□□□□□ -0.19
Col3a1P08121 Gm3329-201ENSMUST00000159873 556 ntBASIC13.89□□□□□ -0.19
Col3a1P08121 Gm16553-201ENSMUST00000160490 716 ntTSL 3 BASIC13.89□□□□□ -0.19
Col3a1P08121 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC13.89□□□□□ -0.19
Col3a1P08121 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Gm25053-202ENSMUST00000199731 132 ntBASIC13.89□□□□□ -0.19
Col3a1P08121 Gm5298-201ENSMUST00000201122 892 ntBASIC13.89□□□□□ -0.19
Col3a1P08121 Gm43966-201ENSMUST00000203301 612 ntBASIC13.89□□□□□ -0.19
Col3a1P08121 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC13.89□□□□□ -0.19
Col3a1P08121 E230034D01Rik-201ENSMUST00000214440 1212 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Col3a1P08121 AC153152.3-201ENSMUST00000222188 1135 ntBASIC13.89□□□□□ -0.19
Col3a1P08121 Ap3s1-202ENSMUST00000224622 978 ntBASIC13.89□□□□□ -0.19
Col3a1P08121 CT009536.2-201ENSMUST00000225370 665 ntBASIC13.89□□□□□ -0.19
Col3a1P08121 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Col3a1P08121 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Col3a1P08121 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Gm28424-201ENSMUST00000187393 1319 ntBASIC13.89□□□□□ -0.19
Col3a1P08121 Gm5171-201ENSMUST00000214944 1415 ntBASIC13.89□□□□□ -0.19
Col3a1P08121 Itgb1bp1-206ENSMUST00000173729 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
Col3a1P08121 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Gm44806-201ENSMUST00000205574 2303 ntBASIC13.89□□□□□ -0.19
Col3a1P08121 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Hist1h2be-201ENSMUST00000051091 2506 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Col3a1P08121 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Col3a1P08121 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col3a1P08121 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col3a1P08121 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col3a1P08121 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col3a1P08121 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Col3a1P08121 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col3a1P08121 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col3a1P08121 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Col3a1P08121 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Col3a1P08121 Harbi1-202ENSMUST00000111322 1316 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Col3a1P08121 Gm13422-201ENSMUST00000118834 504 ntBASIC13.88□□□□□ -0.19
Col3a1P08121 Gm9673-201ENSMUST00000119287 781 ntBASIC13.88□□□□□ -0.19
Col3a1P08121 Gstt3-203ENSMUST00000173537 687 ntTSL 3 BASIC13.88□□□□□ -0.19
Col3a1P08121 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Col3a1P08121 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
Col3a1P08121 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC13.88□□□□□ -0.19
Col3a1P08121 Gm5599-201ENSMUST00000209602 788 ntBASIC13.88□□□□□ -0.19
Col3a1P08121 Gm45758-201ENSMUST00000212448 1006 ntBASIC13.88□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms