Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shroom3Q9QXN0 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.71■□□□□ 0.91
Shroom3Q9QXN0 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shroom3Q9QXN0 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Shroom3Q9QXN0 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shroom3Q9QXN0 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shroom3Q9QXN0 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Shroom3Q9QXN0 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shroom3Q9QXN0 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shroom3Q9QXN0 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Shroom3Q9QXN0 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Shroom3Q9QXN0 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Shroom3Q9QXN0 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Shroom3Q9QXN0 Gm27454-201ENSMUST00000185090 204 ntBASIC20.7■□□□□ 0.9
Shroom3Q9QXN0 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Shroom3Q9QXN0 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Shroom3Q9QXN0 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Shroom3Q9QXN0 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.9
Shroom3Q9QXN0 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Shroom3Q9QXN0 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC20.69■□□□□ 0.9
Shroom3Q9QXN0 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.69■□□□□ 0.9
Shroom3Q9QXN0 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom3Q9QXN0 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Shroom3Q9QXN0 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC20.68■□□□□ 0.9
Shroom3Q9QXN0 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom3Q9QXN0 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom3Q9QXN0 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom3Q9QXN0 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom3Q9QXN0 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shroom3Q9QXN0 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom3Q9QXN0 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom3Q9QXN0 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC20.67■□□□□ 0.9
Shroom3Q9QXN0 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shroom3Q9QXN0 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom3Q9QXN0 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom3Q9QXN0 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom3Q9QXN0 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC20.66■□□□□ 0.9
Shroom3Q9QXN0 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shroom3Q9QXN0 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.66■□□□□ 0.9
Shroom3Q9QXN0 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom3Q9QXN0 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom3Q9QXN0 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom3Q9QXN0 Gm45417-201ENSMUST00000209533 758 ntBASIC20.65■□□□□ 0.9
Shroom3Q9QXN0 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC20.65■□□□□ 0.9
Shroom3Q9QXN0 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC20.65■□□□□ 0.9
Shroom3Q9QXN0 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC20.65■□□□□ 0.9
Shroom3Q9QXN0 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
Shroom3Q9QXN0 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom3Q9QXN0 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Shroom3Q9QXN0 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Shroom3Q9QXN0 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Shroom3Q9QXN0 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.64■□□□□ 0.89
Shroom3Q9QXN0 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shroom3Q9QXN0 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shroom3Q9QXN0 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.89
Shroom3Q9QXN0 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC20.63■□□□□ 0.89
Shroom3Q9QXN0 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Shroom3Q9QXN0 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Shroom3Q9QXN0 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shroom3Q9QXN0 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shroom3Q9QXN0 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shroom3Q9QXN0 AC140930.3-201ENSMUST00000222935 274 ntBASIC20.63■□□□□ 0.89
Shroom3Q9QXN0 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shroom3Q9QXN0 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Shroom3Q9QXN0 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.63■□□□□ 0.89
Shroom3Q9QXN0 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shroom3Q9QXN0 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shroom3Q9QXN0 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Shroom3Q9QXN0 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shroom3Q9QXN0 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shroom3Q9QXN0 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC20.61■□□□□ 0.89
Shroom3Q9QXN0 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC20.61■□□□□ 0.89
Shroom3Q9QXN0 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Shroom3Q9QXN0 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Shroom3Q9QXN0 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Shroom3Q9QXN0 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Shroom3Q9QXN0 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.6■□□□□ 0.89
Shroom3Q9QXN0 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Shroom3Q9QXN0 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shroom3Q9QXN0 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Shroom3Q9QXN0 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC20.6■□□□□ 0.89
Shroom3Q9QXN0 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Shroom3Q9QXN0 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shroom3Q9QXN0 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shroom3Q9QXN0 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shroom3Q9QXN0 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shroom3Q9QXN0 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC20.59■□□□□ 0.89
Shroom3Q9QXN0 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shroom3Q9QXN0 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shroom3Q9QXN0 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shroom3Q9QXN0 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Shroom3Q9QXN0 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shroom3Q9QXN0 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shroom3Q9QXN0 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shroom3Q9QXN0 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shroom3Q9QXN0 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Shroom3Q9QXN0 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.58■□□□□ 0.88
Shroom3Q9QXN0 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Shroom3Q9QXN0 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Shroom3Q9QXN0 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms