Protein–RNA interactions for Protein: Q9QUM7

Msh5, MutS protein homolog 5, mousemouse

Predictions only

Length 833 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh5Q9QUM7 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Msh5Q9QUM7 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Msh5Q9QUM7 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Msh5Q9QUM7 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Msh5Q9QUM7 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC20.83■□□□□ 0.93
Msh5Q9QUM7 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Msh5Q9QUM7 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Msh5Q9QUM7 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh5Q9QUM7 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh5Q9QUM7 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh5Q9QUM7 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh5Q9QUM7 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh5Q9QUM7 Gm11847-201ENSMUST00000125165 1119 ntBASIC20.82■□□□□ 0.92
Msh5Q9QUM7 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh5Q9QUM7 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC20.82■□□□□ 0.92
Msh5Q9QUM7 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC20.82■□□□□ 0.92
Msh5Q9QUM7 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
Msh5Q9QUM7 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.82■□□□□ 0.92
Msh5Q9QUM7 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Msh5Q9QUM7 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh5Q9QUM7 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Msh5Q9QUM7 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Msh5Q9QUM7 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Msh5Q9QUM7 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Msh5Q9QUM7 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC20.81■□□□□ 0.92
Msh5Q9QUM7 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh5Q9QUM7 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Msh5Q9QUM7 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh5Q9QUM7 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Msh5Q9QUM7 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC20.81■□□□□ 0.92
Msh5Q9QUM7 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh5Q9QUM7 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh5Q9QUM7 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Msh5Q9QUM7 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC20.8■□□□□ 0.92
Msh5Q9QUM7 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Msh5Q9QUM7 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh5Q9QUM7 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh5Q9QUM7 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC20.79■□□□□ 0.92
Msh5Q9QUM7 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Msh5Q9QUM7 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh5Q9QUM7 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Msh5Q9QUM7 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
Msh5Q9QUM7 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh5Q9QUM7 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Msh5Q9QUM7 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.78■□□□□ 0.92
Msh5Q9QUM7 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Msh5Q9QUM7 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh5Q9QUM7 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC20.78■□□□□ 0.92
Msh5Q9QUM7 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Msh5Q9QUM7 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh5Q9QUM7 Gm8093-201ENSMUST00000128935 1892 ntBASIC20.77■□□□□ 0.92
Msh5Q9QUM7 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Msh5Q9QUM7 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh5Q9QUM7 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh5Q9QUM7 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Msh5Q9QUM7 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Msh5Q9QUM7 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Msh5Q9QUM7 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msh5Q9QUM7 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC20.75■□□□□ 0.91
Msh5Q9QUM7 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msh5Q9QUM7 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msh5Q9QUM7 Gm16464-201ENSMUST00000117815 1095 ntBASIC20.75■□□□□ 0.91
Msh5Q9QUM7 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC20.75■□□□□ 0.91
Msh5Q9QUM7 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
Msh5Q9QUM7 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msh5Q9QUM7 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Msh5Q9QUM7 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Msh5Q9QUM7 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Msh5Q9QUM7 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
Msh5Q9QUM7 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Msh5Q9QUM7 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Msh5Q9QUM7 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Msh5Q9QUM7 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Msh5Q9QUM7 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh5Q9QUM7 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh5Q9QUM7 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh5Q9QUM7 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Msh5Q9QUM7 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC20.73■□□□□ 0.91
Msh5Q9QUM7 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh5Q9QUM7 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh5Q9QUM7 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh5Q9QUM7 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
Msh5Q9QUM7 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh5Q9QUM7 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Msh5Q9QUM7 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms