Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Upf1Q9EPU0 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC24.1■■□□□ 1.45
Upf1Q9EPU0 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Upf1Q9EPU0 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
Upf1Q9EPU0 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC24.1■■□□□ 1.45
Upf1Q9EPU0 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC24.1■■□□□ 1.45
Upf1Q9EPU0 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Upf1Q9EPU0 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Upf1Q9EPU0 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
Upf1Q9EPU0 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Upf1Q9EPU0 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Upf1Q9EPU0 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC24.08■■□□□ 1.45
Upf1Q9EPU0 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
Upf1Q9EPU0 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC24.08■■□□□ 1.45
Upf1Q9EPU0 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Upf1Q9EPU0 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
Upf1Q9EPU0 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC24.07■■□□□ 1.44
Upf1Q9EPU0 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Upf1Q9EPU0 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Upf1Q9EPU0 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Upf1Q9EPU0 Gm4430-201ENSMUST00000192413 1943 ntBASIC24.06■■□□□ 1.44
Upf1Q9EPU0 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC24.06■■□□□ 1.44
Upf1Q9EPU0 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
Upf1Q9EPU0 Gm13234-201ENSMUST00000120010 747 ntBASIC24.06■■□□□ 1.44
Upf1Q9EPU0 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Upf1Q9EPU0 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Upf1Q9EPU0 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Upf1Q9EPU0 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
Upf1Q9EPU0 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC24.04■■□□□ 1.44
Upf1Q9EPU0 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Upf1Q9EPU0 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
Upf1Q9EPU0 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC24.04■■□□□ 1.44
Upf1Q9EPU0 Gm29994-201ENSMUST00000195495 1193 ntBASIC24.04■■□□□ 1.44
Upf1Q9EPU0 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Upf1Q9EPU0 AC158990.1-201ENSMUST00000221450 2016 ntBASIC24.03■■□□□ 1.44
Upf1Q9EPU0 Gm11421-201ENSMUST00000122124 294 ntBASIC24.03■■□□□ 1.44
Upf1Q9EPU0 Gm42555-201ENSMUST00000199304 1039 ntBASIC24.03■■□□□ 1.44
Upf1Q9EPU0 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC24.03■■□□□ 1.44
Upf1Q9EPU0 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Upf1Q9EPU0 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC24.02■■□□□ 1.44
Upf1Q9EPU0 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC24.02■■□□□ 1.44
Upf1Q9EPU0 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Upf1Q9EPU0 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
Upf1Q9EPU0 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Upf1Q9EPU0 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC24.01■■□□□ 1.43
Upf1Q9EPU0 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Upf1Q9EPU0 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
Upf1Q9EPU0 Gm13181-201ENSMUST00000120117 1069 ntBASIC24.01■■□□□ 1.43
Upf1Q9EPU0 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Upf1Q9EPU0 Gm7514-201ENSMUST00000209475 934 ntBASIC24.01■■□□□ 1.43
Upf1Q9EPU0 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC24.01■■□□□ 1.43
Upf1Q9EPU0 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Upf1Q9EPU0 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Upf1Q9EPU0 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC24.01■■□□□ 1.43
Upf1Q9EPU0 Kdm3b-204ENSMUST00000224715 2032 ntBASIC24.01■■□□□ 1.43
Upf1Q9EPU0 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
Upf1Q9EPU0 Gm43530-201ENSMUST00000195920 274 ntBASIC24■■□□□ 1.43
Upf1Q9EPU0 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC24■■□□□ 1.43
Upf1Q9EPU0 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC24■■□□□ 1.43
Upf1Q9EPU0 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
Upf1Q9EPU0 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC24■■□□□ 1.43
Upf1Q9EPU0 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
Upf1Q9EPU0 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
Upf1Q9EPU0 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Upf1Q9EPU0 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Upf1Q9EPU0 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
Upf1Q9EPU0 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Upf1Q9EPU0 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC23.99■■□□□ 1.43
Upf1Q9EPU0 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Upf1Q9EPU0 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC23.98■■□□□ 1.43
Upf1Q9EPU0 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Upf1Q9EPU0 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Upf1Q9EPU0 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Upf1Q9EPU0 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC23.98■■□□□ 1.43
Upf1Q9EPU0 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
Upf1Q9EPU0 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Upf1Q9EPU0 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Upf1Q9EPU0 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Upf1Q9EPU0 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Upf1Q9EPU0 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Upf1Q9EPU0 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC23.96■■□□□ 1.43
Upf1Q9EPU0 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Upf1Q9EPU0 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC23.96■■□□□ 1.43
Upf1Q9EPU0 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Upf1Q9EPU0 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
Upf1Q9EPU0 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Upf1Q9EPU0 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
Upf1Q9EPU0 Ap3s1-204ENSMUST00000225520 957 ntBASIC23.95■■□□□ 1.42
Upf1Q9EPU0 AC135637.1-201ENSMUST00000227750 365 ntBASIC23.95■■□□□ 1.42
Upf1Q9EPU0 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
Upf1Q9EPU0 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC23.94■■□□□ 1.42
Upf1Q9EPU0 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
Upf1Q9EPU0 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC23.94■■□□□ 1.42
Upf1Q9EPU0 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.42
Upf1Q9EPU0 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
Upf1Q9EPU0 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Upf1Q9EPU0 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
Upf1Q9EPU0 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
Upf1Q9EPU0 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
Upf1Q9EPU0 Gm20049-201ENSMUST00000219950 730 ntBASIC23.91■■□□□ 1.42
Retrieved 100 of 76,532 protein–RNA pairs in 11.1 ms