Protein–RNA interactions for Protein: Q9DCB1

Hmgn3, High mobility group nucleosome-binding domain-containing protein 3, mousemouse

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgn3Q9DCB1 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgn3Q9DCB1 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgn3Q9DCB1 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Hmgn3Q9DCB1 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC19.29■□□□□ 0.68
Hmgn3Q9DCB1 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgn3Q9DCB1 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Hmgn3Q9DCB1 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgn3Q9DCB1 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgn3Q9DCB1 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.29■□□□□ 0.68
Hmgn3Q9DCB1 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgn3Q9DCB1 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Hmgn3Q9DCB1 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Hmgn3Q9DCB1 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgn3Q9DCB1 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Hmgn3Q9DCB1 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgn3Q9DCB1 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgn3Q9DCB1 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgn3Q9DCB1 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.28■□□□□ 0.68
Hmgn3Q9DCB1 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgn3Q9DCB1 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgn3Q9DCB1 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgn3Q9DCB1 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.28■□□□□ 0.68
Hmgn3Q9DCB1 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgn3Q9DCB1 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Hmgn3Q9DCB1 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgn3Q9DCB1 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgn3Q9DCB1 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Hmgn3Q9DCB1 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgn3Q9DCB1 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgn3Q9DCB1 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgn3Q9DCB1 Gm45364-201ENSMUST00000210883 159 ntBASIC19.27■□□□□ 0.68
Hmgn3Q9DCB1 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgn3Q9DCB1 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Hmgn3Q9DCB1 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Hmgn3Q9DCB1 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Hmgn3Q9DCB1 Hsf1-204ENSMUST00000226872 2104 ntBASIC19.27■□□□□ 0.67
Hmgn3Q9DCB1 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Hmgn3Q9DCB1 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Hmgn3Q9DCB1 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgn3Q9DCB1 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
Hmgn3Q9DCB1 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgn3Q9DCB1 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgn3Q9DCB1 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgn3Q9DCB1 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgn3Q9DCB1 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Hmgn3Q9DCB1 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgn3Q9DCB1 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Hmgn3Q9DCB1 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgn3Q9DCB1 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC19.25■□□□□ 0.67
Hmgn3Q9DCB1 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgn3Q9DCB1 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.25■□□□□ 0.67
Hmgn3Q9DCB1 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgn3Q9DCB1 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Hmgn3Q9DCB1 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgn3Q9DCB1 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgn3Q9DCB1 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgn3Q9DCB1 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgn3Q9DCB1 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgn3Q9DCB1 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgn3Q9DCB1 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgn3Q9DCB1 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgn3Q9DCB1 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgn3Q9DCB1 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Hmgn3Q9DCB1 AC122428.2-201ENSMUST00000216321 1832 ntBASIC19.23■□□□□ 0.67
Hmgn3Q9DCB1 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgn3Q9DCB1 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgn3Q9DCB1 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC19.23■□□□□ 0.67
Hmgn3Q9DCB1 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Hmgn3Q9DCB1 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.23■□□□□ 0.67
Hmgn3Q9DCB1 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC19.23■□□□□ 0.67
Hmgn3Q9DCB1 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Hmgn3Q9DCB1 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgn3Q9DCB1 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgn3Q9DCB1 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgn3Q9DCB1 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgn3Q9DCB1 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Hmgn3Q9DCB1 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Hmgn3Q9DCB1 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgn3Q9DCB1 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgn3Q9DCB1 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.22■□□□□ 0.67
Hmgn3Q9DCB1 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgn3Q9DCB1 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Hmgn3Q9DCB1 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.21■□□□□ 0.67
Hmgn3Q9DCB1 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgn3Q9DCB1 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgn3Q9DCB1 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Hmgn3Q9DCB1 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.21■□□□□ 0.67
Hmgn3Q9DCB1 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.21■□□□□ 0.67
Hmgn3Q9DCB1 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
Hmgn3Q9DCB1 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Hmgn3Q9DCB1 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgn3Q9DCB1 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgn3Q9DCB1 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgn3Q9DCB1 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgn3Q9DCB1 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC19.2■□□□□ 0.66
Hmgn3Q9DCB1 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgn3Q9DCB1 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgn3Q9DCB1 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgn3Q9DCB1 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Hmgn3Q9DCB1 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms