Protein–RNA interactions for Protein: Q91Y21

Pcdha1, Protocadherin alpha 1, mousemouse

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1Q91Y21 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdha1Q91Y21 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC21.48■■□□□ 1.03
Pcdha1Q91Y21 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdha1Q91Y21 Gm12821-201ENSMUST00000120022 600 ntBASIC21.48■■□□□ 1.03
Pcdha1Q91Y21 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdha1Q91Y21 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdha1Q91Y21 Gm9870-201ENSMUST00000063874 645 ntBASIC21.48■■□□□ 1.03
Pcdha1Q91Y21 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdha1Q91Y21 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pcdha1Q91Y21 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pcdha1Q91Y21 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Pcdha1Q91Y21 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.47■■□□□ 1.03
Pcdha1Q91Y21 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha1Q91Y21 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha1Q91Y21 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha1Q91Y21 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC21.46■■□□□ 1.03
Pcdha1Q91Y21 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha1Q91Y21 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha1Q91Y21 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha1Q91Y21 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha1Q91Y21 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha1Q91Y21 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdha1Q91Y21 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdha1Q91Y21 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdha1Q91Y21 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Pcdha1Q91Y21 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdha1Q91Y21 Gm27454-201ENSMUST00000185090 204 ntBASIC21.45■■□□□ 1.02
Pcdha1Q91Y21 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdha1Q91Y21 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC21.45■■□□□ 1.02
Pcdha1Q91Y21 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdha1Q91Y21 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdha1Q91Y21 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Pcdha1Q91Y21 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Pcdha1Q91Y21 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
Pcdha1Q91Y21 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Pcdha1Q91Y21 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pcdha1Q91Y21 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC21.44■■□□□ 1.02
Pcdha1Q91Y21 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Pcdha1Q91Y21 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pcdha1Q91Y21 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pcdha1Q91Y21 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC21.43■■□□□ 1.02
Pcdha1Q91Y21 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC21.43■■□□□ 1.02
Pcdha1Q91Y21 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdha1Q91Y21 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.43■■□□□ 1.02
Pcdha1Q91Y21 Kdm3b-204ENSMUST00000224715 2032 ntBASIC21.43■■□□□ 1.02
Pcdha1Q91Y21 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdha1Q91Y21 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Pcdha1Q91Y21 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdha1Q91Y21 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdha1Q91Y21 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdha1Q91Y21 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdha1Q91Y21 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdha1Q91Y21 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdha1Q91Y21 Gm4430-201ENSMUST00000192413 1943 ntBASIC21.41■■□□□ 1.02
Pcdha1Q91Y21 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdha1Q91Y21 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdha1Q91Y21 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC21.41■■□□□ 1.02
Pcdha1Q91Y21 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdha1Q91Y21 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pcdha1Q91Y21 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Pcdha1Q91Y21 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
Pcdha1Q91Y21 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pcdha1Q91Y21 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pcdha1Q91Y21 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC21.4■■□□□ 1.02
Pcdha1Q91Y21 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Pcdha1Q91Y21 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
Pcdha1Q91Y21 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC21.39■■□□□ 1.01
Pcdha1Q91Y21 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pcdha1Q91Y21 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Pcdha1Q91Y21 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pcdha1Q91Y21 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pcdha1Q91Y21 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdha1Q91Y21 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdha1Q91Y21 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC21.38■■□□□ 1.01
Pcdha1Q91Y21 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC21.38■■□□□ 1.01
Pcdha1Q91Y21 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
Pcdha1Q91Y21 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC21.37■■□□□ 1.01
Pcdha1Q91Y21 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdha1Q91Y21 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdha1Q91Y21 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Pcdha1Q91Y21 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdha1Q91Y21 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdha1Q91Y21 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdha1Q91Y21 Gm9207-201ENSMUST00000198773 1115 ntBASIC21.37■■□□□ 1.01
Pcdha1Q91Y21 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC21.37■■□□□ 1.01
Pcdha1Q91Y21 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdha1Q91Y21 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdha1Q91Y21 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdha1Q91Y21 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Gm6277-202ENSMUST00000224036 2779 ntBASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Gm45417-201ENSMUST00000209533 758 ntBASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdha1Q91Y21 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms