Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clrn1Q8K445 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clrn1Q8K445 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.39■□□□□ 0.69
Clrn1Q8K445 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clrn1Q8K445 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Clrn1Q8K445 Gm6277-202ENSMUST00000224036 2779 ntBASIC19.38■□□□□ 0.69
Clrn1Q8K445 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clrn1Q8K445 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Clrn1Q8K445 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clrn1Q8K445 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Clrn1Q8K445 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clrn1Q8K445 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clrn1Q8K445 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC19.38■□□□□ 0.69
Clrn1Q8K445 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Clrn1Q8K445 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clrn1Q8K445 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clrn1Q8K445 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clrn1Q8K445 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC19.37■□□□□ 0.69
Clrn1Q8K445 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC19.37■□□□□ 0.69
Clrn1Q8K445 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC19.37■□□□□ 0.69
Clrn1Q8K445 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clrn1Q8K445 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clrn1Q8K445 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clrn1Q8K445 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Clrn1Q8K445 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.37■□□□□ 0.69
Clrn1Q8K445 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clrn1Q8K445 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clrn1Q8K445 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clrn1Q8K445 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Clrn1Q8K445 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clrn1Q8K445 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC19.36■□□□□ 0.69
Clrn1Q8K445 Etf1-202ENSMUST00000180351 108 ntBASIC19.36■□□□□ 0.69
Clrn1Q8K445 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC19.36■□□□□ 0.69
Clrn1Q8K445 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clrn1Q8K445 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Clrn1Q8K445 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC19.35■□□□□ 0.69
Clrn1Q8K445 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
Clrn1Q8K445 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clrn1Q8K445 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clrn1Q8K445 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clrn1Q8K445 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC19.35■□□□□ 0.69
Clrn1Q8K445 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Clrn1Q8K445 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clrn1Q8K445 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
Clrn1Q8K445 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clrn1Q8K445 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Clrn1Q8K445 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Clrn1Q8K445 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Clrn1Q8K445 Gm7417-201ENSMUST00000192950 473 ntBASIC19.34■□□□□ 0.69
Clrn1Q8K445 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clrn1Q8K445 Gm9959-201ENSMUST00000068277 390 ntBASIC19.34■□□□□ 0.69
Clrn1Q8K445 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
Clrn1Q8K445 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clrn1Q8K445 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clrn1Q8K445 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Clrn1Q8K445 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC19.33■□□□□ 0.68
Clrn1Q8K445 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Clrn1Q8K445 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Clrn1Q8K445 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Clrn1Q8K445 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Clrn1Q8K445 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Clrn1Q8K445 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Clrn1Q8K445 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.32■□□□□ 0.68
Clrn1Q8K445 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clrn1Q8K445 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC19.32■□□□□ 0.68
Clrn1Q8K445 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clrn1Q8K445 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Clrn1Q8K445 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clrn1Q8K445 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clrn1Q8K445 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.31■□□□□ 0.68
Clrn1Q8K445 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clrn1Q8K445 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clrn1Q8K445 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Clrn1Q8K445 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clrn1Q8K445 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Clrn1Q8K445 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clrn1Q8K445 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clrn1Q8K445 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clrn1Q8K445 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clrn1Q8K445 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC19.3■□□□□ 0.68
Clrn1Q8K445 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clrn1Q8K445 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clrn1Q8K445 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clrn1Q8K445 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Clrn1Q8K445 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC19.29■□□□□ 0.68
Clrn1Q8K445 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clrn1Q8K445 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC19.29■□□□□ 0.68
Clrn1Q8K445 Rps24-207ENSMUST00000224568 714 ntBASIC19.29■□□□□ 0.68
Clrn1Q8K445 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clrn1Q8K445 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clrn1Q8K445 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clrn1Q8K445 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clrn1Q8K445 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Clrn1Q8K445 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Clrn1Q8K445 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Clrn1Q8K445 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19.28■□□□□ 0.68
Clrn1Q8K445 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Clrn1Q8K445 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Clrn1Q8K445 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Clrn1Q8K445 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms