Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm43403-201ENSMUST00000198011 1786 ntBASIC28.5■■■□□ 2.15
Usp40Q8BWR4 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC28.5■■■□□ 2.15
Usp40Q8BWR4 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC28.5■■■□□ 2.15
Usp40Q8BWR4 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
Usp40Q8BWR4 Gm12251-201ENSMUST00000117893 792 ntBASIC28.5■■■□□ 2.15
Usp40Q8BWR4 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Usp40Q8BWR4 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC28.5■■■□□ 2.15
Usp40Q8BWR4 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC28.5■■■□□ 2.15
Usp40Q8BWR4 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC28.5■■■□□ 2.15
Usp40Q8BWR4 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC28.5■■■□□ 2.15
Usp40Q8BWR4 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Usp40Q8BWR4 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Usp40Q8BWR4 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
Usp40Q8BWR4 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
Usp40Q8BWR4 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC28.49■■■□□ 2.15
Usp40Q8BWR4 Gm8493-201ENSMUST00000196881 489 ntBASIC28.49■■■□□ 2.15
Usp40Q8BWR4 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC28.49■■■□□ 2.15
Usp40Q8BWR4 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Usp40Q8BWR4 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
Usp40Q8BWR4 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Usp40Q8BWR4 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC28.48■■■□□ 2.15
Usp40Q8BWR4 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC28.48■■■□□ 2.15
Usp40Q8BWR4 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC28.48■■■□□ 2.15
Usp40Q8BWR4 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Usp40Q8BWR4 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Usp40Q8BWR4 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC28.47■■■□□ 2.15
Usp40Q8BWR4 Wdr70-203ENSMUST00000227371 1130 ntBASIC28.47■■■□□ 2.15
Usp40Q8BWR4 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Usp40Q8BWR4 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Usp40Q8BWR4 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Usp40Q8BWR4 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
Usp40Q8BWR4 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Usp40Q8BWR4 Gm21168-201ENSMUST00000199646 1096 ntBASIC28.46■■■□□ 2.15
Usp40Q8BWR4 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Usp40Q8BWR4 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Usp40Q8BWR4 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Usp40Q8BWR4 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Usp40Q8BWR4 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC28.46■■■□□ 2.15
Usp40Q8BWR4 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
Usp40Q8BWR4 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
Usp40Q8BWR4 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
Usp40Q8BWR4 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
Usp40Q8BWR4 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
Usp40Q8BWR4 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
Usp40Q8BWR4 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
Usp40Q8BWR4 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Usp40Q8BWR4 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Usp40Q8BWR4 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC28.44■■■□□ 2.14
Usp40Q8BWR4 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC28.44■■■□□ 2.14
Usp40Q8BWR4 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
Usp40Q8BWR4 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC28.44■■■□□ 2.14
Usp40Q8BWR4 Gm43173-201ENSMUST00000202246 593 ntBASIC28.44■■■□□ 2.14
Usp40Q8BWR4 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC28.44■■■□□ 2.14
Usp40Q8BWR4 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC28.43■■■□□ 2.14
Usp40Q8BWR4 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC28.43■■■□□ 2.14
Usp40Q8BWR4 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Usp40Q8BWR4 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Usp40Q8BWR4 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Usp40Q8BWR4 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Usp40Q8BWR4 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC28.43■■■□□ 2.14
Usp40Q8BWR4 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC28.43■■■□□ 2.14
Usp40Q8BWR4 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
Usp40Q8BWR4 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Usp40Q8BWR4 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Usp40Q8BWR4 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC28.42■■■□□ 2.14
Usp40Q8BWR4 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC28.42■■■□□ 2.14
Usp40Q8BWR4 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC28.42■■■□□ 2.14
Usp40Q8BWR4 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
Usp40Q8BWR4 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Usp40Q8BWR4 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC28.41■■■□□ 2.14
Usp40Q8BWR4 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
Usp40Q8BWR4 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Usp40Q8BWR4 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC28.4■■■□□ 2.14
Usp40Q8BWR4 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Usp40Q8BWR4 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Usp40Q8BWR4 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Usp40Q8BWR4 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC28.4■■■□□ 2.14
Usp40Q8BWR4 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC28.4■■■□□ 2.14
Usp40Q8BWR4 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC28.4■■■□□ 2.14
Usp40Q8BWR4 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
Usp40Q8BWR4 Gm6085-201ENSMUST00000182774 1470 ntBASIC28.39■■■□□ 2.13
Usp40Q8BWR4 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC28.39■■■□□ 2.13
Usp40Q8BWR4 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
Usp40Q8BWR4 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Usp40Q8BWR4 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
Usp40Q8BWR4 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Usp40Q8BWR4 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC28.38■■■□□ 2.13
Usp40Q8BWR4 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Usp40Q8BWR4 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Usp40Q8BWR4 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Usp40Q8BWR4 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC28.37■■■□□ 2.13
Usp40Q8BWR4 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC28.37■■■□□ 2.13
Usp40Q8BWR4 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC28.37■■■□□ 2.13
Usp40Q8BWR4 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Usp40Q8BWR4 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
Usp40Q8BWR4 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Usp40Q8BWR4 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
Usp40Q8BWR4 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC28.37■■■□□ 2.13
Usp40Q8BWR4 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Usp40Q8BWR4 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms