Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Trim56Q80VI1 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Trim56Q80VI1 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Trim56Q80VI1 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.5
Trim56Q80VI1 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC24.4■■□□□ 1.5
Trim56Q80VI1 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Trim56Q80VI1 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC24.4■■□□□ 1.5
Trim56Q80VI1 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC24.4■■□□□ 1.5
Trim56Q80VI1 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC24.39■■□□□ 1.49
Trim56Q80VI1 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Trim56Q80VI1 Gm9847-201ENSMUST00000052528 599 ntBASIC24.39■■□□□ 1.49
Trim56Q80VI1 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
Trim56Q80VI1 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
Trim56Q80VI1 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Trim56Q80VI1 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Trim56Q80VI1 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC24.39■■□□□ 1.49
Trim56Q80VI1 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.49
Trim56Q80VI1 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trim56Q80VI1 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trim56Q80VI1 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trim56Q80VI1 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trim56Q80VI1 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trim56Q80VI1 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trim56Q80VI1 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trim56Q80VI1 Golgb1-201ENSMUST00000023534 498 ntBASIC24.38■■□□□ 1.49
Trim56Q80VI1 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trim56Q80VI1 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trim56Q80VI1 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Trim56Q80VI1 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Trim56Q80VI1 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC24.37■■□□□ 1.49
Trim56Q80VI1 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Trim56Q80VI1 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Trim56Q80VI1 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC24.36■■□□□ 1.49
Trim56Q80VI1 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Trim56Q80VI1 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Trim56Q80VI1 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
Trim56Q80VI1 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC24.35■■□□□ 1.49
Trim56Q80VI1 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Trim56Q80VI1 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Trim56Q80VI1 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Trim56Q80VI1 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
Trim56Q80VI1 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Trim56Q80VI1 Gm10657-201ENSMUST00000193528 1031 ntBASIC24.35■■□□□ 1.49
Trim56Q80VI1 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC24.35■■□□□ 1.49
Trim56Q80VI1 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Trim56Q80VI1 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Trim56Q80VI1 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Trim56Q80VI1 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Trim56Q80VI1 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC24.34■■□□□ 1.49
Trim56Q80VI1 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC24.34■■□□□ 1.49
Trim56Q80VI1 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
Trim56Q80VI1 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Trim56Q80VI1 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Trim56Q80VI1 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Trim56Q80VI1 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
Trim56Q80VI1 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC24.34■■□□□ 1.49
Trim56Q80VI1 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
Trim56Q80VI1 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
Trim56Q80VI1 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Trim56Q80VI1 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
Trim56Q80VI1 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
Trim56Q80VI1 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC24.33■■□□□ 1.49
Trim56Q80VI1 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
Trim56Q80VI1 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Trim56Q80VI1 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Trim56Q80VI1 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
Trim56Q80VI1 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Trim56Q80VI1 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Trim56Q80VI1 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC24.31■■□□□ 1.48
Trim56Q80VI1 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Trim56Q80VI1 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC24.31■■□□□ 1.48
Trim56Q80VI1 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Trim56Q80VI1 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Trim56Q80VI1 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Trim56Q80VI1 Krt8-ps-201ENSMUST00000208495 945 ntBASIC24.3■■□□□ 1.48
Trim56Q80VI1 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Trim56Q80VI1 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
Trim56Q80VI1 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Trim56Q80VI1 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Trim56Q80VI1 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trim56Q80VI1 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trim56Q80VI1 Gm13241-201ENSMUST00000094493 780 ntBASIC24.29■■□□□ 1.48
Trim56Q80VI1 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC24.29■■□□□ 1.48
Trim56Q80VI1 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trim56Q80VI1 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Trim56Q80VI1 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Trim56Q80VI1 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC24.28■■□□□ 1.48
Trim56Q80VI1 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
Trim56Q80VI1 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC24.28■■□□□ 1.48
Trim56Q80VI1 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
Trim56Q80VI1 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
Trim56Q80VI1 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
Trim56Q80VI1 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
Trim56Q80VI1 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC24.27■■□□□ 1.48
Trim56Q80VI1 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Trim56Q80VI1 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
Trim56Q80VI1 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Trim56Q80VI1 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Trim56Q80VI1 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Trim56Q80VI1 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms