Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC21.29■■□□□ 1
Sox1P53783 Gm12527-201ENSMUST00000117967 564 ntBASIC21.29■■□□□ 1
Sox1P53783 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Sox1P53783 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Sox1P53783 AC158990.1-201ENSMUST00000221450 2016 ntBASIC21.28■■□□□ 1
Sox1P53783 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Sox1P53783 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
Sox1P53783 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC21.27■■□□□ 1
Sox1P53783 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC21.27■■□□□ 1
Sox1P53783 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC21.27■■□□□ 1
Sox1P53783 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC21.27■■□□□ 1
Sox1P53783 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Sox1P53783 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC21.27■□□□□ 0.99
Sox1P53783 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC21.26■□□□□ 0.99
Sox1P53783 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
Sox1P53783 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sox1P53783 Gm4968-201ENSMUST00000071458 858 ntBASIC21.26■□□□□ 0.99
Sox1P53783 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sox1P53783 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Sox1P53783 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Sox1P53783 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sox1P53783 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sox1P53783 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sox1P53783 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Sox1P53783 Mir6982-201ENSMUST00000184354 68 ntBASIC21.25■□□□□ 0.99
Sox1P53783 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC21.25■□□□□ 0.99
Sox1P53783 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sox1P53783 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Sox1P53783 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sox1P53783 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC21.24■□□□□ 0.99
Sox1P53783 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sox1P53783 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sox1P53783 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sox1P53783 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.24■□□□□ 0.99
Sox1P53783 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sox1P53783 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sox1P53783 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
Sox1P53783 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sox1P53783 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Sox1P53783 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Sox1P53783 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Sox1P53783 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.23■□□□□ 0.99
Sox1P53783 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC21.23■□□□□ 0.99
Sox1P53783 AC165080.2-201ENSMUST00000217491 1530 ntBASIC21.23■□□□□ 0.99
Sox1P53783 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sox1P53783 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sox1P53783 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sox1P53783 Gm4430-201ENSMUST00000192413 1943 ntBASIC21.22■□□□□ 0.99
Sox1P53783 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Sox1P53783 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sox1P53783 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sox1P53783 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sox1P53783 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Sox1P53783 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sox1P53783 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Sox1P53783 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sox1P53783 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Sox1P53783 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Sox1P53783 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sox1P53783 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Sox1P53783 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC21.21■□□□□ 0.99
Sox1P53783 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sox1P53783 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Sox1P53783 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC21.2■□□□□ 0.98
Sox1P53783 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sox1P53783 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Sox1P53783 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Sox1P53783 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Sox1P53783 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Sox1P53783 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.2■□□□□ 0.98
Sox1P53783 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Sox1P53783 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sox1P53783 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Sox1P53783 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Sox1P53783 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Sox1P53783 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Sox1P53783 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sox1P53783 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Sox1P53783 Kdm3b-204ENSMUST00000224715 2032 ntBASIC21.18■□□□□ 0.98
Sox1P53783 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC21.18■□□□□ 0.98
Sox1P53783 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC21.18■□□□□ 0.98
Sox1P53783 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC21.18■□□□□ 0.98
Sox1P53783 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Sox1P53783 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Sox1P53783 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Sox1P53783 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC21.18■□□□□ 0.98
Sox1P53783 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sox1P53783 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Sox1P53783 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sox1P53783 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Sox1P53783 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC21.17■□□□□ 0.98
Sox1P53783 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Sox1P53783 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Sox1P53783 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Sox1P53783 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Sox1P53783 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Sox1P53783 Gm9988-201ENSMUST00000069786 435 ntBASIC21.16■□□□□ 0.98
Sox1P53783 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC21.16■□□□□ 0.98
Sox1P53783 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Sox1P53783 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms