Protein–RNA interactions for Protein: P43488

Tnfsf4, Tumor necrosis factor ligand superfamily member 4, mousemouse

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf4P43488 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Tnfsf4P43488 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC19.83■□□□□ 0.76
Tnfsf4P43488 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Tnfsf4P43488 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Tnfsf4P43488 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Tnfsf4P43488 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Tnfsf4P43488 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.82■□□□□ 0.76
Tnfsf4P43488 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Tnfsf4P43488 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Tnfsf4P43488 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Tnfsf4P43488 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Tnfsf4P43488 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Tnfsf4P43488 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.81■□□□□ 0.76
Tnfsf4P43488 AC122428.2-201ENSMUST00000216321 1832 ntBASIC19.81■□□□□ 0.76
Tnfsf4P43488 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Tnfsf4P43488 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Tnfsf4P43488 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Tnfsf4P43488 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC19.8■□□□□ 0.76
Tnfsf4P43488 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.8■□□□□ 0.76
Tnfsf4P43488 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Tnfsf4P43488 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.8■□□□□ 0.76
Tnfsf4P43488 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Tnfsf4P43488 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Tnfsf4P43488 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Tnfsf4P43488 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC19.8■□□□□ 0.76
Tnfsf4P43488 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Tnfsf4P43488 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Tnfsf4P43488 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Tnfsf4P43488 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Tnfsf4P43488 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Tnfsf4P43488 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Tnfsf4P43488 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Tnfsf4P43488 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Tnfsf4P43488 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Tnfsf4P43488 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Tnfsf4P43488 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
Tnfsf4P43488 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
Tnfsf4P43488 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Tnfsf4P43488 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Tnfsf4P43488 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Tnfsf4P43488 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Tnfsf4P43488 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Tnfsf4P43488 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Tnfsf4P43488 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Tnfsf4P43488 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Tnfsf4P43488 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Tnfsf4P43488 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Tnfsf4P43488 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Tnfsf4P43488 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.75
Tnfsf4P43488 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Tnfsf4P43488 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Tnfsf4P43488 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Tnfsf4P43488 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Tnfsf4P43488 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Tnfsf4P43488 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Tnfsf4P43488 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Tnfsf4P43488 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC19.76■□□□□ 0.75
Tnfsf4P43488 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Tnfsf4P43488 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Tnfsf4P43488 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Tnfsf4P43488 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC19.75■□□□□ 0.75
Tnfsf4P43488 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Tnfsf4P43488 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Tnfsf4P43488 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Tnfsf4P43488 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
Tnfsf4P43488 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Tnfsf4P43488 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC19.75■□□□□ 0.75
Tnfsf4P43488 AC152827.1-201ENSMUST00000221143 2189 ntBASIC19.75■□□□□ 0.75
Tnfsf4P43488 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Tnfsf4P43488 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Tnfsf4P43488 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Tnfsf4P43488 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Tnfsf4P43488 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Tnfsf4P43488 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Tnfsf4P43488 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
Tnfsf4P43488 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Tnfsf4P43488 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Tnfsf4P43488 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
Tnfsf4P43488 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Tnfsf4P43488 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Tnfsf4P43488 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Tnfsf4P43488 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Tnfsf4P43488 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Tnfsf4P43488 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Tnfsf4P43488 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Tnfsf4P43488 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 15.9 ms