Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cx3cl1O35188 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.24■□□□□ 0.67
Cx3cl1O35188 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC19.24■□□□□ 0.67
Cx3cl1O35188 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC19.24■□□□□ 0.67
Cx3cl1O35188 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cx3cl1O35188 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC19.24■□□□□ 0.67
Cx3cl1O35188 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cx3cl1O35188 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cx3cl1O35188 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Cx3cl1O35188 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cx3cl1O35188 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cx3cl1O35188 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Cx3cl1O35188 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cx3cl1O35188 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Cx3cl1O35188 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cx3cl1O35188 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cx3cl1O35188 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cx3cl1O35188 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cx3cl1O35188 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cx3cl1O35188 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.23■□□□□ 0.67
Cx3cl1O35188 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cx3cl1O35188 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cx3cl1O35188 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Cx3cl1O35188 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cx3cl1O35188 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Cx3cl1O35188 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cx3cl1O35188 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cx3cl1O35188 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cx3cl1O35188 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Cx3cl1O35188 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cx3cl1O35188 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cx3cl1O35188 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cx3cl1O35188 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cx3cl1O35188 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC19.21■□□□□ 0.67
Cx3cl1O35188 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC19.21■□□□□ 0.67
Cx3cl1O35188 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cx3cl1O35188 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Cx3cl1O35188 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cx3cl1O35188 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cx3cl1O35188 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cx3cl1O35188 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cx3cl1O35188 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC19.2■□□□□ 0.66
Cx3cl1O35188 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cx3cl1O35188 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cx3cl1O35188 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC19.2■□□□□ 0.66
Cx3cl1O35188 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cx3cl1O35188 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cx3cl1O35188 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC19.2■□□□□ 0.66
Cx3cl1O35188 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cx3cl1O35188 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cx3cl1O35188 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Cx3cl1O35188 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC19.19■□□□□ 0.66
Cx3cl1O35188 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cx3cl1O35188 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cx3cl1O35188 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cx3cl1O35188 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cx3cl1O35188 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cx3cl1O35188 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cx3cl1O35188 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cx3cl1O35188 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC19.18■□□□□ 0.66
Cx3cl1O35188 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cx3cl1O35188 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cx3cl1O35188 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cx3cl1O35188 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cx3cl1O35188 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC19.17■□□□□ 0.66
Cx3cl1O35188 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cx3cl1O35188 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Cx3cl1O35188 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cx3cl1O35188 Gm44949-201ENSMUST00000206423 1450 ntBASIC19.16■□□□□ 0.66
Cx3cl1O35188 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cx3cl1O35188 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cx3cl1O35188 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cx3cl1O35188 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cx3cl1O35188 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cx3cl1O35188 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cx3cl1O35188 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
Cx3cl1O35188 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cx3cl1O35188 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cx3cl1O35188 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Cx3cl1O35188 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Cx3cl1O35188 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cx3cl1O35188 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cx3cl1O35188 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.15■□□□□ 0.66
Cx3cl1O35188 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cx3cl1O35188 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC19.15■□□□□ 0.66
Cx3cl1O35188 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cx3cl1O35188 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC19.15■□□□□ 0.66
Cx3cl1O35188 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC19.15■□□□□ 0.66
Cx3cl1O35188 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC19.15■□□□□ 0.66
Cx3cl1O35188 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cx3cl1O35188 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.15■□□□□ 0.66
Cx3cl1O35188 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC19.14■□□□□ 0.66
Cx3cl1O35188 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Cx3cl1O35188 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Cx3cl1O35188 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.66
Cx3cl1O35188 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Cx3cl1O35188 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.14■□□□□ 0.65
Cx3cl1O35188 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cx3cl1O35188 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cx3cl1O35188 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms