Protein–RNA interactions for Protein: F6WEU2

Ccdc188, Coiled-coil domain-containing 188, mousemouse

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc188F6WEU2 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc188F6WEU2 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ccdc188F6WEU2 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc188F6WEU2 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ccdc188F6WEU2 AC166356.1-201ENSMUST00000228236 1426 ntBASIC21.31■■□□□ 1
Ccdc188F6WEU2 Wdsub1-202ENSMUST00000102751 1526 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ccdc188F6WEU2 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc188F6WEU2 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ccdc188F6WEU2 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC21.31■■□□□ 1
Ccdc188F6WEU2 Gm9988-201ENSMUST00000069786 435 ntBASIC21.31■■□□□ 1
Ccdc188F6WEU2 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ccdc188F6WEU2 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ccdc188F6WEU2 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
Ccdc188F6WEU2 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC21.3■■□□□ 1
Ccdc188F6WEU2 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ccdc188F6WEU2 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ccdc188F6WEU2 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ccdc188F6WEU2 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Ccdc188F6WEU2 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC21.29■■□□□ 1
Ccdc188F6WEU2 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC21.29■■□□□ 1
Ccdc188F6WEU2 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ccdc188F6WEU2 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Ccdc188F6WEU2 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21.29■■□□□ 1
Ccdc188F6WEU2 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Ccdc188F6WEU2 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ccdc188F6WEU2 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ccdc188F6WEU2 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC21.28■■□□□ 1
Ccdc188F6WEU2 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC21.28■■□□□ 1
Ccdc188F6WEU2 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Ccdc188F6WEU2 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC21.28■■□□□ 1
Ccdc188F6WEU2 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Ccdc188F6WEU2 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Ccdc188F6WEU2 Gm13168-201ENSMUST00000121771 632 ntBASIC21.27■■□□□ 1
Ccdc188F6WEU2 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
Ccdc188F6WEU2 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Ccdc188F6WEU2 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC21.27■■□□□ 1
Ccdc188F6WEU2 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Ccdc188F6WEU2 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Ccdc188F6WEU2 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ccdc188F6WEU2 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Ccdc188F6WEU2 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ccdc188F6WEU2 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Ccdc188F6WEU2 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC21.26■□□□□ 0.99
Ccdc188F6WEU2 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.25■□□□□ 0.99
Ccdc188F6WEU2 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC21.25■□□□□ 0.99
Ccdc188F6WEU2 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc188F6WEU2 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc188F6WEU2 Mir5133-201ENSMUST00000174955 77 ntBASIC21.25■□□□□ 0.99
Ccdc188F6WEU2 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Ccdc188F6WEU2 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC21.24■□□□□ 0.99
Ccdc188F6WEU2 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC21.24■□□□□ 0.99
Ccdc188F6WEU2 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ccdc188F6WEU2 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Ccdc188F6WEU2 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Ccdc188F6WEU2 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Ccdc188F6WEU2 Gm13836-201ENSMUST00000121159 501 ntBASIC21.23■□□□□ 0.99
Ccdc188F6WEU2 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC21.23■□□□□ 0.99
Ccdc188F6WEU2 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC21.23■□□□□ 0.99
Ccdc188F6WEU2 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Ccdc188F6WEU2 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.22■□□□□ 0.99
Ccdc188F6WEU2 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC21.21■□□□□ 0.99
Ccdc188F6WEU2 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc188F6WEU2 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Ccdc188F6WEU2 Gm10812-201ENSMUST00000099864 546 ntBASIC21.21■□□□□ 0.99
Ccdc188F6WEU2 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC21.21■□□□□ 0.99
Ccdc188F6WEU2 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc188F6WEU2 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc188F6WEU2 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Ccdc188F6WEU2 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc188F6WEU2 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc188F6WEU2 Ap3s1-204ENSMUST00000225520 957 ntBASIC21.19■□□□□ 0.98
Ccdc188F6WEU2 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc188F6WEU2 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc188F6WEU2 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Ccdc188F6WEU2 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC21.19■□□□□ 0.98
Ccdc188F6WEU2 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc188F6WEU2 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc188F6WEU2 Gm11421-201ENSMUST00000122124 294 ntBASIC21.18■□□□□ 0.98
Ccdc188F6WEU2 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Ccdc188F6WEU2 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc188F6WEU2 Gm29241-201ENSMUST00000189260 1096 ntBASIC21.18■□□□□ 0.98
Ccdc188F6WEU2 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc188F6WEU2 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc188F6WEU2 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Ccdc188F6WEU2 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Ccdc188F6WEU2 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc188F6WEU2 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc188F6WEU2 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
Ccdc188F6WEU2 Gm13234-201ENSMUST00000120010 747 ntBASIC21.17■□□□□ 0.98
Ccdc188F6WEU2 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc188F6WEU2 Gm43530-201ENSMUST00000195920 274 ntBASIC21.17■□□□□ 0.98
Ccdc188F6WEU2 Gm42555-201ENSMUST00000199304 1039 ntBASIC21.17■□□□□ 0.98
Ccdc188F6WEU2 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc188F6WEU2 Reep4-203ENSMUST00000226563 1444 ntBASIC21.17■□□□□ 0.98
Ccdc188F6WEU2 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ccdc188F6WEU2 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Ccdc188F6WEU2 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Ccdc188F6WEU2 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc188F6WEU2 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ccdc188F6WEU2 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms