Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Gm22567-201ENSMUST00000175542 342 ntBASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Gm42501-201ENSMUST00000200220 1026 ntBASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Pcdhgb8A0A140LI48 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
Pcdhgb8A0A140LI48 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
Pcdhgb8A0A140LI48 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Pcdhgb8A0A140LI48 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Pcdhgb8A0A140LI48 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC18.39■□□□□ 0.53
Pcdhgb8A0A140LI48 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Pcdhgb8A0A140LI48 Gm15820-201ENSMUST00000201566 728 ntBASIC18.39■□□□□ 0.53
Pcdhgb8A0A140LI48 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Pcdhgb8A0A140LI48 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Pcdhgb8A0A140LI48 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Pcdhgb8A0A140LI48 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Pcdhgb8A0A140LI48 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Pcdhgb8A0A140LI48 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pcdhgb8A0A140LI48 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pcdhgb8A0A140LI48 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC18.38■□□□□ 0.53
Pcdhgb8A0A140LI48 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Pcdhgb8A0A140LI48 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Pcdhgb8A0A140LI48 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Pcdhgb8A0A140LI48 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Pcdhgb8A0A140LI48 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pcdhgb8A0A140LI48 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pcdhgb8A0A140LI48 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
Pcdhgb8A0A140LI48 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Pcdhgb8A0A140LI48 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pcdhgb8A0A140LI48 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Pcdhgb8A0A140LI48 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Pcdhgb8A0A140LI48 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pcdhgb8A0A140LI48 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pcdhgb8A0A140LI48 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pcdhgb8A0A140LI48 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Pcdhgb8A0A140LI48 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Pcdhgb8A0A140LI48 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pcdhgb8A0A140LI48 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pcdhgb8A0A140LI48 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
Pcdhgb8A0A140LI48 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Pcdhgb8A0A140LI48 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Pcdhgb8A0A140LI48 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Pcdhgb8A0A140LI48 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pcdhgb8A0A140LI48 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pcdhgb8A0A140LI48 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Pcdhgb8A0A140LI48 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Pcdhgb8A0A140LI48 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Pcdhgb8A0A140LI48 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Pcdhgb8A0A140LI48 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC18.35■□□□□ 0.53
Pcdhgb8A0A140LI48 Gm10232-201ENSMUST00000089221 720 ntBASIC18.35■□□□□ 0.53
Pcdhgb8A0A140LI48 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Pcdhgb8A0A140LI48 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.35■□□□□ 0.53
Pcdhgb8A0A140LI48 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Pcdhgb8A0A140LI48 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Pcdhgb8A0A140LI48 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Pcdhgb8A0A140LI48 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC18.34■□□□□ 0.53
Pcdhgb8A0A140LI48 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC18.34■□□□□ 0.53
Pcdhgb8A0A140LI48 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Pcdhgb8A0A140LI48 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Pcdhgb8A0A140LI48 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Pcdhgb8A0A140LI48 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Pcdhgb8A0A140LI48 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Pcdhgb8A0A140LI48 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Pcdhgb8A0A140LI48 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Pcdhgb8A0A140LI48 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Pcdhgb8A0A140LI48 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Pcdhgb8A0A140LI48 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Pcdhgb8A0A140LI48 Rps24-207ENSMUST00000224568 714 ntBASIC18.33■□□□□ 0.52
Pcdhgb8A0A140LI48 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Pcdhgb8A0A140LI48 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Pcdhgb8A0A140LI48 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC18.33■□□□□ 0.52
Pcdhgb8A0A140LI48 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Pcdhgb8A0A140LI48 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Pcdhgb8A0A140LI48 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Pcdhgb8A0A140LI48 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Pcdhgb8A0A140LI48 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Pcdhgb8A0A140LI48 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Pcdhgb8A0A140LI48 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Pcdhgb8A0A140LI48 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Pcdhgb8A0A140LI48 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Pcdhgb8A0A140LI48 AC093043.1-201ENSMUST00000226700 898 ntBASIC18.32■□□□□ 0.52
Pcdhgb8A0A140LI48 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Pcdhgb8A0A140LI48 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Pcdhgb8A0A140LI48 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Pcdhgb8A0A140LI48 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Pcdhgb8A0A140LI48 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Pcdhgb8A0A140LI48 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Pcdhgb8A0A140LI48 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Pcdhgb8A0A140LI48 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Pcdhgb8A0A140LI48 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Pcdhgb8A0A140LI48 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC18.31■□□□□ 0.52
Pcdhgb8A0A140LI48 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Pcdhgb8A0A140LI48 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Pcdhgb8A0A140LI48 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Pcdhgb8A0A140LI48 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms