Protein–RNA interactions for Protein: A0A0B4J1K2

Trav9-4, T cell receptor alpha variable 9-4 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9-4A0A0B4J1K2 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC15.42■□□□□ 0.06
Trav9-4A0A0B4J1K2 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Trav9-4A0A0B4J1K2 Kdm3b-204ENSMUST00000224715 2032 ntBASIC15.42■□□□□ 0.06
Trav9-4A0A0B4J1K2 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trav9-4A0A0B4J1K2 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trav9-4A0A0B4J1K2 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trav9-4A0A0B4J1K2 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Trav9-4A0A0B4J1K2 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trav9-4A0A0B4J1K2 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trav9-4A0A0B4J1K2 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trav9-4A0A0B4J1K2 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trav9-4A0A0B4J1K2 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trav9-4A0A0B4J1K2 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC15.41■□□□□ 0.06
Trav9-4A0A0B4J1K2 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Trav9-4A0A0B4J1K2 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC15.41■□□□□ 0.06
Trav9-4A0A0B4J1K2 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trav9-4A0A0B4J1K2 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trav9-4A0A0B4J1K2 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trav9-4A0A0B4J1K2 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Trav9-4A0A0B4J1K2 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Trav9-4A0A0B4J1K2 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav9-4A0A0B4J1K2 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav9-4A0A0B4J1K2 Gm45102-201ENSMUST00000207427 857 ntBASIC15.4■□□□□ 0.06
Trav9-4A0A0B4J1K2 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trav9-4A0A0B4J1K2 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav9-4A0A0B4J1K2 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trav9-4A0A0B4J1K2 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Trav9-4A0A0B4J1K2 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC15.4■□□□□ 0.06
Trav9-4A0A0B4J1K2 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav9-4A0A0B4J1K2 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Trav9-4A0A0B4J1K2 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
Trav9-4A0A0B4J1K2 Gm5913-201ENSMUST00000119397 1399 ntBASIC15.39■□□□□ 0.05
Trav9-4A0A0B4J1K2 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trav9-4A0A0B4J1K2 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC15.39■□□□□ 0.05
Trav9-4A0A0B4J1K2 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trav9-4A0A0B4J1K2 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Trav9-4A0A0B4J1K2 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Trav9-4A0A0B4J1K2 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
Trav9-4A0A0B4J1K2 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav9-4A0A0B4J1K2 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav9-4A0A0B4J1K2 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav9-4A0A0B4J1K2 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC15.38■□□□□ 0.05
Trav9-4A0A0B4J1K2 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
Trav9-4A0A0B4J1K2 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav9-4A0A0B4J1K2 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav9-4A0A0B4J1K2 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav9-4A0A0B4J1K2 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Trav9-4A0A0B4J1K2 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Trav9-4A0A0B4J1K2 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Trav9-4A0A0B4J1K2 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav9-4A0A0B4J1K2 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav9-4A0A0B4J1K2 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav9-4A0A0B4J1K2 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC15.37■□□□□ 0.05
Trav9-4A0A0B4J1K2 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Trav9-4A0A0B4J1K2 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav9-4A0A0B4J1K2 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav9-4A0A0B4J1K2 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Trav9-4A0A0B4J1K2 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 Gm6277-202ENSMUST00000224036 2779 ntBASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Trav9-4A0A0B4J1K2 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Trav9-4A0A0B4J1K2 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav9-4A0A0B4J1K2 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC15.35■□□□□ 0.05
Trav9-4A0A0B4J1K2 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav9-4A0A0B4J1K2 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav9-4A0A0B4J1K2 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC15.35■□□□□ 0.05
Trav9-4A0A0B4J1K2 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav9-4A0A0B4J1K2 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC15.35■□□□□ 0.05
Trav9-4A0A0B4J1K2 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav9-4A0A0B4J1K2 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Trav9-4A0A0B4J1K2 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav9-4A0A0B4J1K2 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav9-4A0A0B4J1K2 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav9-4A0A0B4J1K2 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav9-4A0A0B4J1K2 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav9-4A0A0B4J1K2 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav9-4A0A0B4J1K2 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Trav9-4A0A0B4J1K2 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav9-4A0A0B4J1K2 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav9-4A0A0B4J1K2 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav9-4A0A0B4J1K2 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav9-4A0A0B4J1K2 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
Trav9-4A0A0B4J1K2 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC15.34■□□□□ 0.05
Trav9-4A0A0B4J1K2 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trav9-4A0A0B4J1K2 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trav9-4A0A0B4J1K2 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 17.5 ms