Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Adcyap1r1-204ENSMUST00000165857 1491 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Gm13668-201ENSMUST00000119237 1001 ntBASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Gm15549-201ENSMUST00000121595 622 ntBASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Gm7271-202ENSMUST00000191515 836 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Gm5996-201ENSMUST00000211110 718 ntBASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Gm18856-203ENSMUST00000222015 483 ntTSL 2 BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 AC136376.2-201ENSMUST00000228819 490 ntBASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Gm43773-201ENSMUST00000198548 2162 ntBASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Usp40Q8BWR4 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Gm44831-201ENSMUST00000208469 2989 ntBASIC16.1■□□□□ 0.17
Usp40Q8BWR4 AC156031.2-201ENSMUST00000213107 3310 ntBASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Lrrc29-203ENSMUST00000210412 2304 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Brd4-202ENSMUST00000114475 2731 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Gm15329-201ENSMUST00000121408 155 ntBASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Nop16-202ENSMUST00000148222 790 ntTSL 5 BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Snhg17-205ENSMUST00000151331 529 ntTSL 2 BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Gm29410-201ENSMUST00000188383 694 ntBASIC16.1■□□□□ 0.17
Usp40Q8BWR4 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Gm3028-201ENSMUST00000213805 1119 ntBASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Ifitm2-201ENSMUST00000081649 655 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Aurkc-203ENSMUST00000207711 1320 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Usp40Q8BWR4 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Gm18986-201ENSMUST00000216029 1986 ntBASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Pcgf5-211ENSMUST00000225920 6443 ntBASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Clrn1-203ENSMUST00000072551 1662 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Tatdn3-203ENSMUST00000110891 1214 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Tatdn3-204ENSMUST00000110893 1242 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Gm14395-201ENSMUST00000120494 563 ntBASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Bach2it1-201ENSMUST00000133451 481 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Gm6548-201ENSMUST00000167498 1165 ntBASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Mir6407-201ENSMUST00000184510 101 ntBASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 CT025551.1-201ENSMUST00000223996 692 ntBASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Olfr76-201ENSMUST00000087822 1048 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Usp40Q8BWR4 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 77.1 ms