Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 AC113441.2-201ENSMUST00000221538 1468 ntBASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Gabre-201ENSMUST00000064780 4306 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Upf3bQ3ULL6 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Cd63-ps-202ENSMUST00000154992 717 ntBASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Gm25881-201ENSMUST00000157783 103 ntBASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Gm27552-201ENSMUST00000183351 62 ntBASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Gm27844-201ENSMUST00000183613 62 ntBASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Upf3bQ3ULL6 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Gm13812-201ENSMUST00000118061 1347 ntBASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Gm13810-201ENSMUST00000118584 1347 ntBASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Gm12196-201ENSMUST00000120954 262 ntBASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Gm43172-201ENSMUST00000202139 2137 ntBASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Upf3bQ3ULL6 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Mylip-202ENSMUST00000222178 1954 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Gtf3c4-201ENSMUST00000037117 6941 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Gm11663-201ENSMUST00000117888 290 ntBASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Gm7857-201ENSMUST00000117957 358 ntBASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC12.61□□□□□ -0.39
Upf3bQ3ULL6 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC12.61□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 135.5 ms