Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 1500015O10Rik-201ENSMUST00000027217 902 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Gm21358-201ENSMUST00000191645 1659 ntBASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Upf3aQ3ULJ3 Anxa9-204ENSMUST00000164406 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Adra1a-206ENSMUST00000225182 2337 ntBASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Nudt18-202ENSMUST00000228554 3619 ntBASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Gm7278-201ENSMUST00000119836 1401 ntBASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Rbp2-202ENSMUST00000187905 611 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Gm4900-201ENSMUST00000222046 1628 ntBASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC12.4□□□□□ -0.42
Upf3aQ3ULJ3 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.43
Upf3aQ3ULJ3 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Upf3aQ3ULJ3 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Upf3aQ3ULJ3 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Upf3aQ3ULJ3 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Upf3aQ3ULJ3 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Gm14892-201ENSMUST00000117636 267 ntBASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Gm15507-201ENSMUST00000133523 592 ntTSL 5 BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Gm25951-201ENSMUST00000175330 64 ntBASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Gm22877-201ENSMUST00000175451 105 ntBASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Gm17798-201ENSMUST00000182282 1035 ntBASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Gm9116-201ENSMUST00000192400 1018 ntBASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 4930405N21Rik-201ENSMUST00000199950 1200 ntBASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Gm7504-201ENSMUST00000201449 424 ntBASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 1700012P22Rik-201ENSMUST00000030323 974 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Gm4978-201ENSMUST00000071565 801 ntBASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Olfr1047-201ENSMUST00000099901 960 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Upf3aQ3ULJ3 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3aQ3ULJ3 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3aQ3ULJ3 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Upf3aQ3ULJ3 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms