Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC13.07□□□□□ -0.32
Col6a1Q04857 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Col6a1Q04857 Gm43610-201ENSMUST00000199117 365 ntBASIC13.07□□□□□ -0.32
Col6a1Q04857 Mpv17-206ENSMUST00000201353 846 ntAPPRIS P3 TSL 3 BASIC13.07□□□□□ -0.32
Col6a1Q04857 Gm18460-201ENSMUST00000208088 464 ntBASIC13.07□□□□□ -0.32
Col6a1Q04857 Gm45500-201ENSMUST00000211676 803 ntBASIC13.07□□□□□ -0.32
Col6a1Q04857 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC13.07□□□□□ -0.32
Col6a1Q04857 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC13.07□□□□□ -0.32
Col6a1Q04857 AC102368.1-201ENSMUST00000227161 892 ntBASIC13.07□□□□□ -0.32
Col6a1Q04857 Tmem220-202ENSMUST00000079077 1147 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Gm23680-201ENSMUST00000083162 164 ntBASIC13.07□□□□□ -0.32
Col6a1Q04857 Gm36970-201ENSMUST00000193688 1859 ntBASIC13.07□□□□□ -0.32
Col6a1Q04857 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Col6a1Q04857 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Gm42941-201ENSMUST00000200347 1321 ntBASIC13.07□□□□□ -0.32
Col6a1Q04857 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Col6a1Q04857 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Col6a1Q04857 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Col6a1Q04857 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Gm37324-201ENSMUST00000194500 4504 ntBASIC13.06□□□□□ -0.32
Col6a1Q04857 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC13.06□□□□□ -0.32
Col6a1Q04857 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Col6a1Q04857 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Col6a1Q04857 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Gm14274-201ENSMUST00000117182 615 ntBASIC13.06□□□□□ -0.32
Col6a1Q04857 Gm15409-201ENSMUST00000135240 520 ntTSL 2 BASIC13.06□□□□□ -0.32
Col6a1Q04857 Vmn1r-ps63-201ENSMUST00000174565 989 ntBASIC13.06□□□□□ -0.32
Col6a1Q04857 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC13.06□□□□□ -0.32
Col6a1Q04857 Gm18558-201ENSMUST00000186253 1214 ntBASIC13.06□□□□□ -0.32
Col6a1Q04857 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC13.06□□□□□ -0.32
Col6a1Q04857 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC13.06□□□□□ -0.32
Col6a1Q04857 Gm5714-201ENSMUST00000197343 566 ntBASIC13.06□□□□□ -0.32
Col6a1Q04857 Gm44124-201ENSMUST00000204159 472 ntBASIC13.06□□□□□ -0.32
Col6a1Q04857 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC13.06□□□□□ -0.32
Col6a1Q04857 Gm45856-201ENSMUST00000212752 416 ntBASIC13.06□□□□□ -0.32
Col6a1Q04857 AC121960.1-201ENSMUST00000227982 564 ntBASIC13.06□□□□□ -0.32
Col6a1Q04857 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Col6a1Q04857 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Gm43267-201ENSMUST00000199664 1796 ntBASIC13.06□□□□□ -0.32
Col6a1Q04857 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC13.06□□□□□ -0.32
Col6a1Q04857 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Gm43721-201ENSMUST00000199677 2313 ntBASIC13.06□□□□□ -0.32
Col6a1Q04857 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC13.06□□□□□ -0.32
Col6a1Q04857 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Apon-201ENSMUST00000060782 1397 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
Col6a1Q04857 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Col6a1Q04857 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Col6a1Q04857 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC13.05□□□□□ -0.32
Col6a1Q04857 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Col6a1Q04857 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Col6a1Q04857 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC13.05□□□□□ -0.32
Col6a1Q04857 Krtap4-9-201ENSMUST00000105059 1059 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Col6a1Q04857 Acrbp-204ENSMUST00000112413 672 ntTSL 2 BASIC13.05□□□□□ -0.32
Col6a1Q04857 Gm21987-201ENSMUST00000119704 456 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Col6a1Q04857 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
Col6a1Q04857 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC13.05□□□□□ -0.32
Col6a1Q04857 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Col6a1Q04857 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms