Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb1P63158 Gm13392-201ENSMUST00000117708 150 ntBASIC13.02□□□□□ -0.33
Hmgb1P63158 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC13.02□□□□□ -0.33
Hmgb1P63158 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb1P63158 Gm27046-201ENSMUST00000182160 463 ntBASIC13.02□□□□□ -0.33
Hmgb1P63158 Mir7085-201ENSMUST00000184353 66 ntBASIC13.02□□□□□ -0.33
Hmgb1P63158 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC13.02□□□□□ -0.33
Hmgb1P63158 Gm6621-201ENSMUST00000193251 772 ntBASIC13.02□□□□□ -0.33
Hmgb1P63158 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC13.02□□□□□ -0.33
Hmgb1P63158 Gm19287-201ENSMUST00000203190 358 ntBASIC13.02□□□□□ -0.33
Hmgb1P63158 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb1P63158 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb1P63158 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Hmgb1P63158 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC13.02□□□□□ -0.33
Hmgb1P63158 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb1P63158 Cttnbp2nl-201ENSMUST00000077548 4946 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb1P63158 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC13.02□□□□□ -0.33
Hmgb1P63158 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb1P63158 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb1P63158 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb1P63158 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb1P63158 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb1P63158 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb1P63158 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb1P63158 Tef-202ENSMUST00000109553 4401 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Hmgb1P63158 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Gm10827-201ENSMUST00000181897 2586 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Grm1-203ENSMUST00000105561 4435 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Gm42669-202ENSMUST00000160160 3080 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Zfp689-201ENSMUST00000053392 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Gm14109-201ENSMUST00000118814 309 ntBASIC13.01□□□□□ -0.33
Hmgb1P63158 Gm13562-201ENSMUST00000125198 797 ntTSL 2 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Gm2991-201ENSMUST00000173338 480 ntBASIC13.01□□□□□ -0.33
Hmgb1P63158 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Tmem52-205ENSMUST00000178238 968 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Gm9192-201ENSMUST00000183221 985 ntBASIC13.01□□□□□ -0.33
Hmgb1P63158 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Gm8956-201ENSMUST00000203939 825 ntBASIC13.01□□□□□ -0.33
Hmgb1P63158 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Fut4-201ENSMUST00000061498 4074 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Hmgb1P63158 AC126444.1-201ENSMUST00000225938 1768 ntBASIC13.01□□□□□ -0.33
Hmgb1P63158 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC13.01□□□□□ -0.33
Hmgb1P63158 Gm37849-201ENSMUST00000194722 1881 ntBASIC13.01□□□□□ -0.33
Hmgb1P63158 Pigc-201ENSMUST00000028021 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Pacsin1-201ENSMUST00000045896 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Hmgb1P63158 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
Hmgb1P63158 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Hmgb1P63158 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Hmgb1P63158 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb1P63158 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Hmgb1P63158 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Hmgb1P63158 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC13□□□□□ -0.33
Hmgb1P63158 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb1P63158 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb1P63158 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Hmgb1P63158 Olfr742-203ENSMUST00000217437 2244 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Hmgb1P63158 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb1P63158 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC13□□□□□ -0.33
Hmgb1P63158 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC13□□□□□ -0.33
Hmgb1P63158 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC13□□□□□ -0.33
Hmgb1P63158 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb1P63158 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC13□□□□□ -0.33
Hmgb1P63158 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
Hmgb1P63158 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC13□□□□□ -0.33
Hmgb1P63158 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC13□□□□□ -0.33
Hmgb1P63158 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb1P63158 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Hmgb1P63158 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC13□□□□□ -0.33
Hmgb1P63158 Hoxb5os-202ENSMUST00000150698 596 ntTSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 155.9 ms