Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 4933406M09Rik-201ENSMUST00000162187 1768 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
Usp4P35123 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usp4P35123 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usp4P35123 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usp4P35123 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usp4P35123 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Usp4P35123 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC12.38□□□□□ -0.43
Usp4P35123 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usp4P35123 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Usp4P35123 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC12.37□□□□□ -0.43
Usp4P35123 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Usp4P35123 Rsl24d1-201ENSMUST00000034738 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Gm43522-201ENSMUST00000196697 1922 ntBASIC12.37□□□□□ -0.43
Usp4P35123 Gm18262-201ENSMUST00000222560 1946 ntBASIC12.37□□□□□ -0.43
Usp4P35123 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Usp4P35123 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 AC124577.2-201ENSMUST00000217413 2420 ntBASIC12.37□□□□□ -0.43
Usp4P35123 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC12.37□□□□□ -0.43
Usp4P35123 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC12.37□□□□□ -0.43
Usp4P35123 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Usp4P35123 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Usp4P35123 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Gm12997-201ENSMUST00000120207 640 ntBASIC12.37□□□□□ -0.43
Usp4P35123 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC12.37□□□□□ -0.43
Usp4P35123 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC12.37□□□□□ -0.43
Usp4P35123 Gm18711-201ENSMUST00000199341 750 ntBASIC12.37□□□□□ -0.43
Usp4P35123 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Usp4P35123 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Vps54-201ENSMUST00000006221 4323 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 AC113441.2-201ENSMUST00000221538 1468 ntBASIC12.37□□□□□ -0.43
Usp4P35123 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Gm38140-201ENSMUST00000193617 2755 ntBASIC12.37□□□□□ -0.43
Usp4P35123 Gm45187-201ENSMUST00000207697 2760 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Zfp526-201ENSMUST00000055604 3380 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Usp4P35123 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC12.37□□□□□ -0.43
Usp4P35123 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Dsc2-202ENSMUST00000075214 4508 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Usp4P35123 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 4930463O16Rik-201ENSMUST00000020222 2088 ntTSL 2 BASIC12.36□□□□□ -0.43
Usp4P35123 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Gm18986-201ENSMUST00000216029 1986 ntBASIC12.36□□□□□ -0.43
Usp4P35123 Kat7-203ENSMUST00000103159 3248 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Usp4P35123 Ing1-204ENSMUST00000210041 1881 ntTSL 5 BASIC12.36□□□□□ -0.43
Usp4P35123 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Usp4P35123 Gm13142-201ENSMUST00000117213 1453 ntBASIC12.36□□□□□ -0.43
Usp4P35123 Gm10782-202ENSMUST00000223775 1480 ntBASIC12.36□□□□□ -0.43
Usp4P35123 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC12.36□□□□□ -0.43
Usp4P35123 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC12.36□□□□□ -0.43
Usp4P35123 Sfrp4-203ENSMUST00000222464 4049 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
Usp4P35123 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC12.36□□□□□ -0.43
Usp4P35123 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC12.36□□□□□ -0.43
Usp4P35123 Gm12316-201ENSMUST00000125853 406 ntTSL 5 BASIC12.36□□□□□ -0.43
Usp4P35123 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC12.36□□□□□ -0.43
Usp4P35123 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC12.36□□□□□ -0.43
Usp4P35123 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Usp4P35123 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC12.36□□□□□ -0.43
Usp4P35123 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC12.36□□□□□ -0.43
Usp4P35123 Gm17931-201ENSMUST00000208132 634 ntBASIC12.36□□□□□ -0.43
Usp4P35123 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
Usp4P35123 Gm20425-201ENSMUST00000166836 3028 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Usp4P35123 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 1700019D03Rik-201ENSMUST00000050567 3641 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Usp4P35123 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Usp4P35123 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms