Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Gm9797-202ENSMUST00000218003 294 ntBASIC12.13□□□□□ -0.47
Vps28Q9D1C8 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Vps28Q9D1C8 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Gm9796-201ENSMUST00000062249 2250 ntBASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Gm10851-201ENSMUST00000192087 1685 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Gm44152-201ENSMUST00000205007 1691 ntBASIC12.12□□□□□ -0.47
Vps28Q9D1C8 AC154639.1-201ENSMUST00000224393 2849 ntBASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Gm37014-201ENSMUST00000194723 2253 ntBASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Vps28Q9D1C8 Fzd4-201ENSMUST00000058755 6720 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Rbpsuh-rs3-201ENSMUST00000182751 1441 ntBASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Gm8522-201ENSMUST00000118416 1929 ntBASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Mgmt-201ENSMUST00000081510 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Gm12036-201ENSMUST00000120008 530 ntBASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Cd63-ps-202ENSMUST00000154992 717 ntBASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Gm38228-201ENSMUST00000193169 1293 ntBASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Gm43378-201ENSMUST00000199336 582 ntBASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Gm5369-201ENSMUST00000217499 588 ntBASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Gm37542-201ENSMUST00000192563 2832 ntBASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Immt-203ENSMUST00000114151 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC12.11□□□□□ -0.47
Vps28Q9D1C8 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms