Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Clrn1Q8K445 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Gm10545-201ENSMUST00000097612 4969 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Gm15004-201ENSMUST00000119192 630 ntBASIC11.14□□□□□ -0.63
Clrn1Q8K445 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC11.14□□□□□ -0.63
Clrn1Q8K445 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
Clrn1Q8K445 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC11.14□□□□□ -0.63
Clrn1Q8K445 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Gm43184-201ENSMUST00000197247 542 ntBASIC11.14□□□□□ -0.63
Clrn1Q8K445 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Gm9176-201ENSMUST00000219955 1120 ntBASIC11.14□□□□□ -0.63
Clrn1Q8K445 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Tnc-201ENSMUST00000030056 6833 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Pdcd11-201ENSMUST00000072141 6041 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Clrn1Q8K445 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Gm43807-201ENSMUST00000200678 1781 ntBASIC11.13□□□□□ -0.63
Clrn1Q8K445 Ltbp1-202ENSMUST00000112514 4870 ntAPPRIS ALT1 TSL 5 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Slc6a5-201ENSMUST00000056442 7065 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Gm5846-201ENSMUST00000193146 1414 ntBASIC11.13□□□□□ -0.63
Clrn1Q8K445 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC11.13□□□□□ -0.63
Clrn1Q8K445 Gm15711-201ENSMUST00000118889 535 ntBASIC11.13□□□□□ -0.63
Clrn1Q8K445 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Gm9034-201ENSMUST00000182071 1005 ntBASIC11.13□□□□□ -0.63
Clrn1Q8K445 Gm6114-201ENSMUST00000182472 968 ntBASIC11.13□□□□□ -0.63
Clrn1Q8K445 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Gm38319-201ENSMUST00000194537 1266 ntBASIC11.13□□□□□ -0.63
Clrn1Q8K445 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Iqgap3-201ENSMUST00000071812 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Nrde2-201ENSMUST00000021596 3718 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Clrn1Q8K445 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 60.4 ms