Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Gm14208-201ENSMUST00000119645 678 ntBASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Gm9083-201ENSMUST00000120423 819 ntBASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 B9d1os-201ENSMUST00000137010 674 ntBASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Gm26361-201ENSMUST00000158868 186 ntBASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 AC108416.1-202ENSMUST00000228927 1201 ntBASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Klk1b7-ps-201ENSMUST00000078897 448 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Sin3a-206ENSMUST00000168177 5086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 AC138329.2-201ENSMUST00000225579 1842 ntBASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Gm5846-201ENSMUST00000193146 1414 ntBASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Sh3rf1Q69ZI1 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Gm38116-201ENSMUST00000193873 1533 ntBASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Lsamp-206ENSMUST00000187695 3411 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Fxr1-206ENSMUST00000198051 2127 ntTSL 5 BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Nuak2-202ENSMUST00000082125 3107 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 1700019D03Rik-201ENSMUST00000050567 3641 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 A430033K04Rik-203ENSMUST00000198958 2264 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Gm13315-201ENSMUST00000120376 991 ntBASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Mir6927-201ENSMUST00000184494 71 ntBASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Gm8712-201ENSMUST00000221090 701 ntBASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 A930024N18Rik-201ENSMUST00000181251 3955 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Igsf9-202ENSMUST00000111235 4205 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Gm4864-201ENSMUST00000219894 1461 ntBASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Sh3rf1Q69ZI1 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Igsf9-201ENSMUST00000052629 4133 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Gm20649-201ENSMUST00000160950 2740 ntTSL 2 BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Gm21939-201ENSMUST00000221137 2773 ntBASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Gm37931-201ENSMUST00000194686 2866 ntBASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Gm12217-201ENSMUST00000118858 696 ntBASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Gm13736-201ENSMUST00000119272 253 ntBASIC12□□□□□ -0.49
Sh3rf1Q69ZI1 Gm4760-201ENSMUST00000119663 1030 ntBASIC12□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms