Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm21136-201ENSMUST00000186812 2575 ntBASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Gm6605-201ENSMUST00000031488 2574 ntBASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Olfr140-202ENSMUST00000111506 3449 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Ftsj1-201ENSMUST00000033513 3425 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Slc6a1-201ENSMUST00000032454 4302 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Slc9a3-203ENSMUST00000221703 5118 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Xpnpep1-211ENSMUST00000183274 2120 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 AC125209.1-201ENSMUST00000225812 766 ntBASIC11.49□□□□□ -0.57
Col28a1Q2UY11 CT030182.1-201ENSMUST00000225935 533 ntBASIC11.49□□□□□ -0.57
Col28a1Q2UY11 CT025533.2-201ENSMUST00000228715 1248 ntBASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Rgr-203ENSMUST00000225070 4704 ntBASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 AC167022.1-201ENSMUST00000218647 1458 ntBASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Gm6157-201ENSMUST00000199935 1897 ntBASIC11.49□□□□□ -0.57
Col28a1Q2UY11 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Tspan14-202ENSMUST00000224209 2477 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Lgals8-201ENSMUST00000099820 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC11.48□□□□□ -0.57
Col28a1Q2UY11 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Rps4l-202ENSMUST00000204242 789 ntBASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Gm5781-201ENSMUST00000219792 443 ntBASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Morn2-202ENSMUST00000227729 656 ntBASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Rbms1-201ENSMUST00000028347 4436 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Galnt9-202ENSMUST00000165856 1541 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Rsc1a1-201ENSMUST00000105782 1749 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Oscar-203ENSMUST00000148012 1796 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Dao-202ENSMUST00000112292 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Ces4a-201ENSMUST00000161289 2433 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Olfr5-202ENSMUST00000209866 2980 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Dzip1l-201ENSMUST00000078367 3981 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
Col28a1Q2UY11 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Plcd4-206ENSMUST00000113750 2692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col28a1Q2UY11 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms